Simple phylogenetic trees in Julia to work with Diversity.jl - https://github.com/EcoJulia/Diversity.jl
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Updated
Jun 12, 2024 - Julia
Simple phylogenetic trees in Julia to work with Diversity.jl - https://github.com/EcoJulia/Diversity.jl
Phylogenetic trees in Julia
Biological Sequence Substitution Models for Julia
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
Newick formatted (phylogenetic) trees
Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC
The BioJulia package for working with phylogenetic trees and geneologies.
Phylogenetic biogeography SSE models for large state spaces
(Hierarchical) Phylogenetic Models in Julia
Tools for handling rooted phylogenetic or genealogic trees with Julia.
Tutorial to infer phylogenetic networks from multilocus data with SNaQ in PhyloNetworks
Some phylogenetic tree visualization routines
Bachelor thesis project regarding continuous approximations of discrete phylogenetic migration models.
Phylogenetic tree tables and other phylogenetic utilities. (Functions include: prt(tr) and other utilities. Also includes the PhyloNetworks tree object/reader/writer, with minimal dependencies.)
Bayesian estimation of conditional clade distributions etc.
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