Bayesian Evolutionary Analysis by Sampling Trees
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Updated
Jun 27, 2024 - Java
Bayesian Evolutionary Analysis by Sampling Trees
Bayesian Evolutionary Analysis Sampling Trees
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
UFCG: Universal Fungal Core Genes
ALignment Transformation EnviRonment
Source code for TreeBASE web application and database
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
A feature rich and easy to use phylogenetic tree editor
This curation tool allows curators to make precise assertions as to when functions were gained and lost during evolution and record the evidence (e.g. experimentally supported GO annotations and phylogenetic information including orthology) for those assertions.
Local clock model using relaxed and strict clocks
A java package which implements a quartet based method named QFM-FI to estimate phylogenetic tree from a set of quartets.
A Java library for event-based reading and writing of different phylogenetic file formats through a common interface
Automatic Detection of Positively Selected Sites
Greedy Strict Consensus Merger Project: containing the algorithmic part (gscm-lib) and the comandline tool (gscm-cli))
Galaxy pipelines as plugin for IRIDA intergration
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