SaprotHub: Making Protein Modeling Accessible to All Biologists
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Updated
Aug 15, 2024 - Jupyter Notebook
SaprotHub: Making Protein Modeling Accessible to All Biologists
Official git repository for Biopython (originally converted from CVS)
The Rosetta Bio-macromolecule modeling package.
macromolecular crystallography library and utilities
Base Scipion plugin defining objects and protocols for CHEMoinformatics
This package takes in arbitrary protein sequences and compute Psipred (S4pred) secondary structure predictions.
Generating protein sequences and structures using an equivariant diffusion model. This framework produces 3-D coordinates of backbone alpha carbons along with two physicochemical features for each amino acid, enabling the generation of protein sequences based on these features.
Calculation of interatomic interactions in molecular structures
[ICLR'24 spotlight] Saprot: Protein Language Model with Structural Alphabet
Library for dealing with computational chemistry files
Fast protein structure searching or your money back
Rather brute optimizer for negative image-based models
Derive ΔG for single residues from HDX-MS data
Foldseek enables fast and sensitive comparisons of large structure sets.
Molecular simulation in Julia
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
The Integrative Modeling Platform
Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance.
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