A python library with scripts and helpers classes for quantms workflow
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Updated
Aug 15, 2024 - Python
A python library with scripts and helpers classes for quantms workflow
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
HDAnalyzeR: HDA Internal Package for Streamed-line Proteomics Analysis
The codebase of the OpenMS project
R Package for preprocessing, normalizing, and analyzing proteomics data
Exon is an OLAP query engine specifically for biology and life science applications.
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
A collection of Galaxy-related training material
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Tools for filtering k-mer data
Computational biology/bioinformatics workflows, codes, and concept notes on NGS data
This repository is associated with a bioRxiv preprint describing the MacCoss laboratory's quality control measures for sample preparation, system suitability, and assessing results.
Fast and accurate label-free quantification for small and very large numbers of proteomes
Proteomics and IHC data analysis for LGSC and SBT tumour microenvironment study.
A library for describing the structure of glycopeptides
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