Complex structural variant visualization for HiFi sequencing data

A structural variation pipeline for short-read sequencing

Structural variation caller using third generation sequencing

Kmer Analysis of Pileups for Genotyping

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

Targeted genotyper for complex polymorphic genes

Structural variant calling tutorial using long-reads.

Fast and accurate gene fusion detection from RNA-Seq data

A scalable variant calling and benchmarking framework supporting both short and long reads.

A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.

Toolkit for calling structural variants using short or long reads

Structural variant toolkit for VCFs

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

A tutorial on structural variant calling for short read sequencing data

Structural variant discovery and genotyping from mapped PacBio HiFi data

nRex: Germline and somatic single-nucleotide, short indel and structural variant calling

A toolkit to harmonize and filter structural variations across methods and samples.

Python package to annotate and visualize gene fusions.

Identifies structural variant (SV) sites shared between two VCF files.

Structural variant VCF annotation, duplicate removal and comparison