Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
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Updated
Jul 1, 2024 - Scala
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Workflow Description Language - Specification and Implementations
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Workflow Description Language developer tools & local runner
A collection of reusable WDL tasks. Category:Other
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Our VM/Docker sharing infrastructure and management component
📦 Package manager for REAPER
Long read production pipelines
Workflow Description Language compiler for the DNAnexus platform
A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
CLI for interacting with Cromwell servers
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Configure workflow/pipeline tests using yaml files.
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