Glf files

This desribes the output format of -doGlf.

• -doGlf 1; binary 10xdouble per sample, ordering is AA,AC,AG,AT,CC,CG,CT,GG,GT,TT
• -doGlf 2; beagle in/out-put gz requires -doMajorMinor [1|2].
• **-doGlf 3; binary beagle in/out-put gz requires -doMajorMinor [1|2] **
• -doGlf 4; text format. Output is chr,pos,AA,AC,AG,AT,CC,CG,CT,GG,GT,TT