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Skotte2012
aalbrechtsen edited this page Sep 7, 2026
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Line Skotte, Thorfinn Sand Korneliussen, Anders Albrechtsen. Association testing for next-generation sequencing data using score statistics. Genet Epidemiol. 2012 Jul;36(5):430-7.
@Article{pmid22570057,
Author="Skotte, L. and Korneliussen, T. S. and Albrechtsen, A. ",
Title="{{A}ssociation testing for next-generation sequencing data using score statistics}",
Journal="Genet. Epidemiol.",
Year="2012",
Volume="36",
Number="5",
Pages="430--437",
Month="Jul"
}
doi: 10.1002/gepi.21636
Pages
Population genetics
Population structure
- Admixture
- Fst
- ABBABABA (D-stat)
- ABBABABA (multipop)
- Population branch statistics (pbs)
- PCA
- PCA (sampling approach)
- Linkage disequilibrium
Medical genetics
IBD/IBS
Summaries
SNPs and genotypes
- Genotypes likelihoods
- Major and Minor
- Allele frequencies
- Genotype calling
- Haploid calling
- SNP Calling
Output
Misc/util programs
Program structure
About ANGSD