v0.106.0

Oceananigans v0.106.0

Diff since v0.105.4

Breaking changes

• #5355 changed the default file when restoring from a checkpointer.

Merged pull requests:

• Add benchmarking package with earth_ocean case (#5317) (@glwagner)
• Rework support for reduction operations on Metal GPU to avoid materialization of the interior (#5329) (@alesok)
• (0.106) Log checkpoint file and mtime when restoring simulations (#5355) (@taimoorsohail)
• (0.105.5) Fix initialize_closure_fields!() use with DynamicSmagorinsky (#5366) (@tomchor)
• Fix section rendering that includes greek LaTeX characters in the documentation (#5380) (@navidcy)
• Bump julia-actions/cache from 2 to 3 (#5382) (@dependabot[bot])
• Propose fix some typos (#5385) (@jeis4wpi)
• Reduce number of ambiguities (#5390) (@giordano)
• Explicit imports in Grids (#5391) (@giordano)
• Load XESFM after Oceananigans (#5393) (@giordano)
• Add new paper reference to Oceananigans documentation (#5395) (@navidcy)
• Fix formatting of reference list in index.md (#5397) (@navidcy)
• Fix typo with density perturbation in docs (#5398) (@navidcy)
• Fix the reference list in the Langmuir example (#5400) (@navidcy)
• (0.105.5) Add unit test for zero momentum flux at immersed peripheral nodes (#5402) (@tomchor)
• Implement ReactantCore.materialize_traced_array for Field (#5409) (@Pangoraw)
• Revise citation for De Abreu and Timmermans (#5411) (@navidcy)
• Remove Oceananigans compact from Project.toml in benchmarks (#5414) (@simone-silvestri)

Closed issues:

• Lagrangian-averaged DynamicSmagorinsky producing zero values for eddy viscosity (again) (#5365)
• Some incorrect formatting in the docs (#5377)
• Langmuir example includes all reference list from the Docs (#5399)
• T_forcing and S_forcing do not receive the expected values (#5407)