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Sample Changer Support Module

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Dominic Oram edited this page Oct 13, 2021 · 10 revisions

Wiki > The Backend System > IOCs > Motor IOCs > Galil > Galil Instrument Configuration > Sample Changer Support Module

The sample changer support module (also referred to as the SANS sample changer) allows a sample changer to be configured on top of motion set-points. The functionality this adds is to allow a motion set-point list to be created from the definitions of racks and slots.

This takes input files rackDefinitions.xml and samplechanger.xml and then allows the user to dynamically build the motion setpoints configuration file. As of October 2020, the user can also select a specific rack, and this will rebuild the list of motion setpoints to only include the positions listed in that rack. If the selected sample changer is the special value _ALL, positions from all sample changers will be included in the built motionsetpoints file. This option is automatically added to the list of available sample changers.

An example sampleChanger + motionSetpoints configuration can be found in sampleChanger support. As a minimum, you will need to define the following environment variables:

  • RACKDEFS: Path to a rack definitions XML file.
  • SLOT_DETAILS_FILE: Path to a slot details XML file.
  • SAMPLE_LKUP_FILE: Path to the sample.txt file that should be written by this module

What to do after changing racks

  1. Edit Instrument/Settings/machinename/configurations/motionSetPoints/sampleChanger.xml setting the rack_type, xoff and yoff attributes.
  2. Either press the "Reload config" button on the sample changer OPI, which can be accessed from the synoptic view or put a value to machinename:username:SAMPCHNG:RECALC

Mapping motors to axes

The sample change works in terms of motors with names beginning MOT:STACK:. These are axes which are mapped by the file Instrument/Settings/machinename/configurations/galil/axes.cmd

Mapping named positions to motor positions

This is done using motionSetPoints. The file Instrument/Settings/machinename/configurations/galil/motionsetpoints.cmd includes lines which create PVs starting LKUP:SAMPLE that perform the conversion from name to position, using the lookup file Instrument/Settings/machinename/configurations/motionSetPoints/samples.txt.

The first coordinate is the position of machinename:username:MOT:STACK:Y and the second coordinate is machinename:username:MOT:STACK:ZLO.

Generating samples.txt by hand is tedious so the sampleChanger IOC exists to automate the process

Defining the Sample Positions

The positions are calculated from two xml files, rack_definitions.xml, which should change rarely if ever and samplechanger.xml which should be edited to define what is currently loaded. Both are located in Instrument/Settings/machinename/configurations/motionSetPoints

rack_definitions.xml

This contains two sections, racks and slots.

Racks contain a series of rack element which definite the various rack types. Each rack has a name and contains multiple position elements which have a name and an x and a y coordinate.


	<?xml version="1.0"?>
	<definitions>
		<racks>
			<rack name="Rectangular">
				<position name="1" y="0" x="10"/>
				<position name="2" y="0" x="20"/>
				<position name="3" y="0" x="30"/>
				...

Slots define the slots into which racks can be fitted. Each slot has a name and an x and a y coordinate.


	<slots>
		<slot name="Top_Left" x="0" y="15"/>
		<slot name="Top_Right" x="300" y="15"/>
		<slot name="Bottom_Left" x="0" y="0"/>
		<slot name="Bottom_Right" x="290" y="17"/>
	</slots>

samplechanger.xml

This defines what racks are currently loaded.


	<?xml version="1.0"?>
	<slots>
		<slot name="Top_Left" sample_suffix="TL" rack_type="Banjo 1mm" xoff="0.0" yoff="0.0"/>
		<slot name="Top_Right" rack_type="Rectangular" xoff="0.0" yoff="0.0"/>
		<slot name="Bottom_Left" rack_type="Double Stopper" xoff="0.0" yoff="0.0"/>
		<slot name="Bottom_Right" rack_type="Banjo 5mm" xoff="0.0" yoff="0.0"/>
	</slots>

Each slot element has the following attributes:

  • name, which must match the name of one of the slot elements in rack_definitions.xml
  • rack_type, which must match the name of one of the rack elements in rack_definitions.xml
  • xoff and yoff which are the offsets between the nominal position of the slot defined in rack_definitions.xml and its actual position
  • sample_suffix, optional attribute. By default the name of each sample position in the rack will be the name of the position as defined in the rack followed by the name of the slot e.g. 1Top_Left. By specifying the sample_suffix you can change what is appended to the sample names e.g. the above would create a sample called 1TL.

Generating sample.txt

The sampleChanger module will be loaded by Instrument/Settings/machinename/configurations/galil/sampleChanger.cmd. It creates the PV machinename:username:SAMPCHNG:RECALC. Putting to that PV will cause the module to read rack_definitions.xml and samplechanger.xml and use them to generate a new sample.txt. It will then prompt the relevant motionSetPoint instance to load the name sample.txt.

Recalculation can also be initiated from the GUI by pressing the "Reload config" on the sample changer OPI, which can be accessed from the synoptic view.

The motor positions for a sample position are calculated by summing the positions for the slot, the position in the rack and the offset. This if the slot has x=1, the position has x=2 and the slot has xoff=3 then the x position will be 6. The x position corresponds to machinename:username:MOT:STACK:Y and the y position corresponds to machinename:username:MOT:STACK:ZLO.

Position names are created by concatenating the position name and the slot name (or sample_suffix, see above).

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