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Bump the uv group with 10 updates - #100

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Aug 1, 2026
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Bump the uv group with 10 updates#100
d33bs merged 1 commit into
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dependabot/uv/uv-92a5bada9d

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Bumps the uv group with 10 updates:

Package From To
bioio-ome-zarr 3.5.1 3.6.0
matplotlib 3.11.0 3.11.1
pandas 3.0.3 3.0.5
pyarrow 24.0.0 25.0.0
trame-vtk 2.11.13 2.11.15
trame-vuetify 3.2.2 3.2.5
vortex-data 0.75.0 0.83.0
poethepoet 0.47.1 0.48.0
pydata-sphinx-theme 0.19.0 0.20.0
jupytext 1.19.4 1.19.5

Updates bioio-ome-zarr from 3.5.1 to 3.6.0

Release notes

Sourced from bioio-ome-zarr's releases.

v3.6.0

What's Changed

Full Changelog: bioio-devs/bioio-ome-zarr@v3.5.2...v3.6.0

Commits

Updates matplotlib from 3.11.0 to 3.11.1

Release notes

Sourced from matplotlib's releases.

REL: v3.11.1

This is the first bugfix release of the 3.11.x series.

This release contains several bug-fixes and adjustments:

  • Fix tight layout of multiple subplots with sharey=True
  • Fix NoNorm cursor formatting for uint8 images
  • Fix occasional misalignment in reported mouse position (also fix a bug with canvas height)
  • Fix clipped Axis labels on 3D plots with tight layout
  • Fix inverted Axis on 3D plots
  • Fix restoring 'auto' aspect in 3D axes after switching from 'equal'
  • Fix missing glyphs when subsetting Type 1 fonts in PDF
  • Fix oversized embedding of Type 42 fonts in PDF/PostScript files

As well as several documentation and typing improvements and corrections.

Commits
  • 3c1757a REL: v3.11.1
  • 792c6b5 DOC: Prepare for 3.11.1
  • aaff9f6 Merge branch 'v3.11.0-doc' into v3.11.x
  • d4f4527 Merge pull request #32052 from meeseeksmachine/auto-backport-of-pr-32038-on-v...
  • 6ad4bcf Merge pull request #32050 from meeseeksmachine/auto-backport-of-pr-31304-on-v...
  • 7fb74d3 Merge pull request #32051 from meeseeksmachine/auto-backport-of-pr-32037-on-v...
  • c624aec Backport PR #32038: Fix occasional misalignment in reported mouse position (a...
  • 8eda2b7 Backport PR #32037: Bump the actions group with 3 updates
  • a0e7ae5 Backport PR #31304: Fix restoring 'auto' aspect in 3D axes after switching fr...
  • 9001323 Merge pull request #32047 from meeseeksmachine/auto-backport-of-pr-32025-on-v...
  • Additional commits viewable in compare view

Updates pandas from 3.0.3 to 3.0.5

Release notes

Sourced from pandas's releases.

pandas 3.0.5

We are pleased to announce the release of pandas 3.0.5. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

pandas 3.0.4

We are pleased to announce the release of pandas 3.0.4. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Commits
  • e68db09 RLS: 3.0.5
  • 0697623 Backport PR #66428: DOC: update whatsnew for 3.0.5 (#66430)
  • 5d846d0 Backport PR #66090 on branch 3.0.x (BLD: exclude numpy 2.5.0 when building wh...
  • bef7a2b Backport PR #66169 on branch 3.0.x (CI: Fix pyarrow-nightly job (stale nightl...
  • 8188eb1 RLS: 3.0.4 (#66079)
  • bd35f15 [3.0.x] BUG: fix CoW issue in eval() (#66072)
  • 6195872 [backport 3.0.x] BUG: anchor whole alternation in Series.str.match for PyArro...
  • 70313be Backport PR #66051 on branch 3.0.x (BUG: fix regression in DataFrame setitem ...
  • 57ed3e2 [backport 3.0.x] Bump pypa/cibuildwheel from 3.4.1 to 4.1.0 (#65934) (#66026)
  • f9693fc [backport 3.0.x] BUG(pandas 3.0 regression): drop(index=...) doesn't accept N...
  • Additional commits viewable in compare view

Updates pyarrow from 24.0.0 to 25.0.0

Release notes

Sourced from pyarrow's releases.

Apache Arrow 25.0.0

Release Notes URL: https://arrow.apache.org/release/25.0.0.html

Apache Arrow 25.0.0 RC1

Release Notes: Release Candidate: 25.0.0 RC1

Commits
  • 59bea6e MINOR: [Release] Update versions for 25.0.0
  • 381fab6 MINOR: [Release] Update .deb/.rpm changelogs for 25.0.0
  • 7f72d5b MINOR: [Release] Update CHANGELOG.md for 25.0.0
  • fe2f85c GH-50336: [Release][Archery] Fix archery GitHub integration for release scrip...
  • c658548 GH-50293: [CI] Run check-labels for all triggers to avoid cancelling further ...
  • f83c8ca GH-50330: [C++][R][Parquet] Add missing typename in RleBitPackedDecoderGetRun...
  • 35e0f63 GH-50318: [R][CI] Install missing libpng-dev for test-r-linux-as-cran (#50328)
  • 61ca7a9 GH-50295: [C++][R] #include <ranges> in vector_select_k.cc breaks macOS CRAN ...
  • 1b6edb8 GH-50291: [Python][Packaging] Stop using nightly build dependencies for build...
  • e183ea9 MINOR: [Docs] Add Timestamp With Offset to canonical extension types status (...
  • Additional commits viewable in compare view

Updates trame-vtk from 2.11.13 to 2.11.15

Release notes

Sourced from trame-vtk's releases.

v2.11.15 (2026-07-28)

This release is published under the BSD License License.

Bug Fixes

  • array: Use numpy dtype for js array mapping (3af24ed)

  • export: Prevent gc on new array for conversion (590c5c3)

  • int64: Always convert to 32b for vtk.js (4705177)

  • static_viewer: Update viewer to latest version (b2df082)

  • StaticViewer: Update static viewer to fix loading of embedded dataset (c794868)

Documentation

  • Make wasm work with 64 bits (6e4f5c0)

  • example: Add link to issue (094ee32)


Detailed Changes: v2.11.14...v2.11.15

v2.11.14 (2026-07-24)

This release is published under the BSD License License.

Bug Fixes

  • vtkLongArray: Convert to 32 bits for JS (06d5cff)

Detailed Changes: v2.11.13...v2.11.14

Commits
  • e74a051 2.11.15
  • 4705177 fix(int64): always convert to 32b for vtk.js
  • 3af24ed fix(array): use numpy dtype for js array mapping
  • b2df082 fix(static_viewer): update viewer to latest version
  • 590c5c3 fix(export): prevent gc on new array for conversion
  • 6e4f5c0 docs: make wasm work with 64 bits
  • c794868 fix(StaticViewer): update static viewer to fix loading of embedded dataset
  • 094ee32 docs(example): add link to issue
  • ad63335 2.11.14
  • 06d5cff fix(vtkLongArray): convert to 32 bits for JS
  • See full diff in compare view

Updates trame-vuetify from 3.2.2 to 3.2.5

Release notes

Sourced from trame-vuetify's releases.

v3.2.5 (2026-07-20)

Bug Fixes

Continuous Integration

  • Add trame as dependency for tests (c1dfec6)

Testing


Detailed Changes: v3.2.4...v3.2.5

v3.2.4 (2026-07-20)

Bug Fixes

  • Maintain deprecated import (90dcae8)

Detailed Changes: v3.2.3...v3.2.4

v3.2.3 (2026-07-20)

Bug Fixes

  • generate-python: Be more specific on url portion to replace (5782378)

  • generate-python: Update doc url for v2 to point to v2 docs (8c14e57)

Since https://cdn.jsdelivr.net/npm/vuetify@2.6.0/dist/json/web-types.json has the same issue of pointing to v4 docs

Chores

  • Restore deleted lockfiles and update them (dd54331)

  • Update pre-commit (cf50731)

Update pre-commit config to latest trame guidelines

  • deps: Update Vuetify to latest v3 (8ad5b60)

  • vue3: Update generate_python script to use v3 docs (bcabed4)

... (truncated)

Changelog

Sourced from trame-vuetify's changelog.

v3.2.5 (2026-07-20)

Bug Fixes

Continuous Integration

  • Add trame as dependency for tests (c1dfec6)

Testing

v3.2.4 (2026-07-20)

Bug Fixes

  • Maintain deprecated import (90dcae8)

v3.2.3 (2026-07-20)

Bug Fixes

  • generate-python: Be more specific on url portion to replace (5782378)

  • generate-python: Update doc url for v2 to point to v2 docs (8c14e57)

Since https://cdn.jsdelivr.net/npm/vuetify@2.6.0/dist/json/web-types.json has the same issue of pointing to v4 docs

Chores

  • Restore deleted lockfiles and update them (dd54331)

  • Update pre-commit (cf50731)

Update pre-commit config to latest trame guidelines

  • deps: Update Vuetify to latest v3

... (truncated)

Commits
  • 731f913 3.2.5
  • c1dfec6 ci: add trame as dependency for tests
  • dcf56f6 test: improve widget test
  • af770eb fix(v2): update doc url
  • 78f33a3 3.2.4
  • 90dcae8 fix: maintain deprecated import
  • 1371ab9 3.2.3
  • 8c14e57 fix(generate-python): Update doc url for v2 to point to v2 docs
  • 5782378 fix(generate-python): Be more specific on url portion to replace
  • c74fcc6 ci: Fix paths to navigate during build
  • Additional commits viewable in compare view

Updates vortex-data from 0.75.0 to 0.83.0

Release notes

Sourced from vortex-data's releases.

0.83.0

What's Changed

Full Changelog: vortex-data/vortex@0.82.0...0.83.0

0.82.0

What's Changed

New Contributors

Full Changelog: vortex-data/vortex@0.81.0...0.82.0

0.81.0

What's Changed

Full Changelog: vortex-data/vortex@0.80.0...0.81.0

0.80.0

... (truncated)

Commits
  • 14a55e9 fix(cuda): synchronize Arrow exports with buffer streams (#8952)
  • 468c5f1 Introduce array_slots macro for type-safe array slot access (#8912)
  • 1e6102b break: new layout tree vtable (#8910)
  • 299592d feat[cuda]: add direct I/O for local file scans (#8898)
  • 63d1b8a vortex-jni includes vortex-geo, jni arrow import/export uses session methods ...
  • 9c10b73 Expose LayoutStrategy::buffered_bytes through the jni boundary (#8909)
  • 1bda2e9 feat[compressor]: require schemes to declare their produced encodings (#8944)
  • 03ca2ed duckdb: pushdown expressions with LIMIT (#8943)
  • 11a6c04 perf(cuda): decode FSST strings with GPU-built Arrow offsets (#8921)
  • 1b28996 perf(array): hoist decimal same-scale cast plan (#8932)
  • Additional commits viewable in compare view

Updates poethepoet from 0.47.1 to 0.48.0

Release notes

Sourced from poethepoet's releases.

0.48.0

Enhancements

Full Changelog: nat-n/poethepoet@v0.47.1...v0.48.0

Commits
  • e4d032c Bump version to 0.48.0
  • e7a31be feat: Add uses_env task option for loading variables from a task's output (...
  • See full diff in compare view

Updates pydata-sphinx-theme from 0.19.0 to 0.20.0

Release notes

Sourced from pydata-sphinx-theme's releases.

v0.20.0

What's Changed

🔴 Breaking

Fixes

Internal tooling

Dependencies

New Contributors

Full Changelog: pydata/pydata-sphinx-theme@v0.19.0...v0.20.0

Commits

Updates jupytext from 1.19.4 to 1.19.5

Release notes

Sourced from jupytext's releases.

Version 1.19.5

Changed

  • Harden the github action (#1569). Thanks to Peyton Murray for this PR
  • The JupyterLab extension is now built with jupyter-builder - Thanks to Mahendra Paipuri for this PR (#1590)
  • zizmor and pre-commit are now required to pass before any other CI job runs, and the extension lint is now part of pre-commit (#1594)
  • Enabled TypeScript strict null checks in the JupyterLab extension - Thanks to Michał Krassowski for this PR (#1586)

Fixed

  • Detecting IPython help/shell commands no longer takes quadratic time on lines made of whitespace - Thanks to Naveed for this PR (#1582)
  • Fixed unguarded access to the languageInfo.extensions array, which could still make Jupytext show notebook icons for Python files when the kernel metadata was incomplete - Thanks to Michał Krassowski for this PR (#1584)

Security

  • marimo_py_to_notebook now reuses its secure (0600, mkstemp-backed) temporary files instead of closing and reopening them by name, which removed the safe permissions and left a window for a symlink attack on shared machines (#1568). Thanks to Naveed for reporting and fixing this!
Changelog

Sourced from jupytext's changelog.

1.19.5 (2026-07-21)

Changed

  • Harden the github action (#1569). Thanks to Peyton Murray for this PR
  • The JupyterLab extension is now built with jupyter-builder - Thanks to Mahendra Paipuri for this PR (#1590)
  • zizmor and pre-commit are now required to pass before any other CI job runs, and the extension lint is now part of pre-commit (#1594)
  • Enabled TypeScript strict null checks in the JupyterLab extension - Thanks to Michał Krassowski for this PR (#1586)

Fixed

  • Detecting IPython help/shell commands no longer takes quadratic time on lines made of whitespace - Thanks to Naveed for this PR (#1582)
  • Fixed unguarded access to the languageInfo.extensions array, which could still make Jupytext show notebook icons for Python files when the kernel metadata was incomplete - Thanks to Michał Krassowski for this PR (#1584)

Security

  • marimo_py_to_notebook now reuses its secure (0600, mkstemp-backed) temporary files instead of closing and reopening them by name, which removed the safe permissions and left a window for a symlink attack on shared machines (#1568). Thanks to Naveed for reporting and fixing this!
Commits
  • 3132c6c Version 1.19.5
  • d8d4d14 build(deps): bump axios from 1.16.0 to 1.18.1 in /jupyterlab in the jupytext-...
  • 1a6fde9 build(deps): bump the actions-dependencies group with 3 updates
  • 0068463 build(deps): bump astro
  • 58c1eb9 build(deps): bump the jupytext-extension-dependencies group across 2 director...
  • af6134e Migrate to jupyter-builder for building frontend extension (#1590)
  • bb0de16 build(deps): bump the actions-dependencies group across 1 directory with 8 up...
  • 555b4c2 avoid quadratic backtracking in help/bash magic regex
  • f24a3b7 reuse secure temp files in marimo_py_to_notebook
  • d53e2f1 Require zizmor and precommit on ci (#1594)
  • Additional commits viewable in compare view

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Bumps the uv group with 10 updates:

| Package | From | To |
| --- | --- | --- |
| [bioio-ome-zarr](https://github.com/bioio-devs/bioio-ome-zarr) | `3.5.1` | `3.6.0` |
| [matplotlib](https://github.com/matplotlib/matplotlib) | `3.11.0` | `3.11.1` |
| [pandas](https://github.com/pandas-dev/pandas) | `3.0.3` | `3.0.5` |
| [pyarrow](https://github.com/apache/arrow) | `24.0.0` | `25.0.0` |
| [trame-vtk](https://github.com/Kitware/trame-vtk) | `2.11.13` | `2.11.15` |
| [trame-vuetify](https://github.com/Kitware/trame-vuetify) | `3.2.2` | `3.2.5` |
| [vortex-data](https://github.com/spiraldb/vortex) | `0.75.0` | `0.83.0` |
| [poethepoet](https://github.com/nat-n/poethepoet) | `0.47.1` | `0.48.0` |
| [pydata-sphinx-theme](https://github.com/pydata/pydata-sphinx-theme) | `0.19.0` | `0.20.0` |
| [jupytext](https://github.com/jupytext/jupytext) | `1.19.4` | `1.19.5` |


Updates `bioio-ome-zarr` from 3.5.1 to 3.6.0
- [Release notes](https://github.com/bioio-devs/bioio-ome-zarr/releases)
- [Commits](bioio-devs/bioio-ome-zarr@v3.5.1...v3.6.0)

Updates `matplotlib` from 3.11.0 to 3.11.1
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.11.0...v3.11.1)

Updates `pandas` from 3.0.3 to 3.0.5
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v3.0.3...v3.0.5)

Updates `pyarrow` from 24.0.0 to 25.0.0
- [Release notes](https://github.com/apache/arrow/releases)
- [Commits](apache/arrow@apache-arrow-24.0.0...apache-arrow-25.0.0)

Updates `trame-vtk` from 2.11.13 to 2.11.15
- [Release notes](https://github.com/Kitware/trame-vtk/releases)
- [Changelog](https://github.com/Kitware/trame-vtk/blob/master/CHANGELOG.md)
- [Commits](Kitware/trame-vtk@v2.11.13...v2.11.15)

Updates `trame-vuetify` from 3.2.2 to 3.2.5
- [Release notes](https://github.com/Kitware/trame-vuetify/releases)
- [Changelog](https://github.com/Kitware/trame-vuetify/blob/master/CHANGELOG.md)
- [Commits](Kitware/trame-vuetify@v3.2.2...v3.2.5)

Updates `vortex-data` from 0.75.0 to 0.83.0
- [Release notes](https://github.com/spiraldb/vortex/releases)
- [Commits](vortex-data/vortex@0.75.0...0.83.0)

Updates `poethepoet` from 0.47.1 to 0.48.0
- [Release notes](https://github.com/nat-n/poethepoet/releases)
- [Commits](nat-n/poethepoet@v0.47.1...v0.48.0)

Updates `pydata-sphinx-theme` from 0.19.0 to 0.20.0
- [Release notes](https://github.com/pydata/pydata-sphinx-theme/releases)
- [Changelog](https://github.com/pydata/pydata-sphinx-theme/blob/main/RELEASE.md)
- [Commits](pydata/pydata-sphinx-theme@v0.19.0...v0.20.0)

Updates `jupytext` from 1.19.4 to 1.19.5
- [Release notes](https://github.com/jupytext/jupytext/releases)
- [Changelog](https://github.com/jupytext/jupytext/blob/main/CHANGELOG.md)
- [Commits](jupytext/jupytext@v1.19.4...v1.19.5)

---
updated-dependencies:
- dependency-name: bioio-ome-zarr
  dependency-version: 3.6.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: matplotlib
  dependency-version: 3.11.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: pandas
  dependency-version: 3.0.5
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: pyarrow
  dependency-version: 25.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: uv
- dependency-name: trame-vtk
  dependency-version: 2.11.15
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: trame-vuetify
  dependency-version: 3.2.5
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: vortex-data
  dependency-version: 0.83.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: poethepoet
  dependency-version: 0.48.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: pydata-sphinx-theme
  dependency-version: 0.20.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: jupytext
  dependency-version: 1.19.5
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: uv
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Aug 1, 2026
@dependabot
dependabot Bot requested a review from d33bs as a code owner August 1, 2026 11:11
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Aug 1, 2026
@d33bs
d33bs merged commit 0f2a87c into main Aug 1, 2026
12 checks passed
@dependabot
dependabot Bot deleted the dependabot/uv/uv-92a5bada9d branch August 1, 2026 16:44
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