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Vic_ks edited this page May 20, 2020 · 5 revisions
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BAnOCC Tutorial

BAnOCC (Bayesian Analysis of Compositional Correlations) is a novel Bayesian model to infer appropriate associations between features in compositional data.

Support is available: bioBakery Support Forum. Feel free to join the forum or to post any questions directly.


Table of Contents


Overview

BAnOCC.png


1. Setup

1.1 Requirements

  • R software (version >= 3.3)
  • Plus the following R packages: rstan, mvtnorm, coda, and stringr

1.2 Installation

Install BAnOCC by first obtaining the source code. Then install the dependencies and install the software. Run the following commands to install BAnOCC and its dependencies. :

$ git clone https://github.com/biobakery/banocc.git 
$ R -q -e "install.packages(c('rstan', 'mvtnorm', 'coda', 'stringr'), repos='http://cran.r-project.org')"
$ R CMD INSTALL banocc

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