v1.5.0

LinkML Model 1.5.x series

See https://github.com/linkml/linkml-model/releases/tag/v1.5.0 for a summary of metamodel changes

What's Changed

• Fixing table in howto docs by @cmungall in #1193
• Use package name ("linkml") to look up version by @dalito in #1196
• Tests for schemas that have slots with leading digits. closes #1181 by @cmungall in #1182
• Add --validate command to pythongen. This will attempt to compile generated code by @cmungall in #1192
• Updating documentation and removing linkml-ws references fixes #1129, fixes #1183 by @sierra-moxon in #1201
• Improve clean-up of sqlAlchemy pools/sessions by @dalito in #1206
• Add a mermaid ERDiagram generator. by @cmungall in #1204
• Fix non-stopping CI on windows by @dalito in #1202
• Test case for pydantic inlining by @cmungall in #1199
• Fixes inheritance of range from slot_usage in docgen #1208 by @cmungall in #1209
• ensure mergeimports is being considered in linkmlgen by @sujaypatil96 in #1226
• Extend example runner and integrate into docgen, issue 1218 by @cmungall in #1222
• ensure example_runner initializes PythonGenerator safely. Fixes #1219 by @cmungall in #1230
• Add required annotations to generate not-NULL columns by @jankatins in #1233
• schema builder documentation by @cmungall in #1225
• Fix stacktrace setting to be localized to CLI. #1227 by @cmungall in #1229
• #1236 RUN expansion and test with poetry by @turbomam in #1237
• Let both sides of a linking tables include pk ids by @jankatins in #1232
• issue #1245 by @kervel in #1246
• Pydanticgen: support polymorphism using type designators by @sierra-moxon in #1224
• Fix shaclgen by making mixins and classes without parents not closed by @vemonet in #1264
• Pydantic: stop generating Unions with only one member by @kervel in #1265
• fix edge case with clashing injected PK name in relmodel_transformer. 1255 by @cmungall in #1256
• Add option for using type designators for example runner by @cmungall in #1274
• Implicitly apply value constrains to all elements of multivalued slots in JSON Schema by @pkalita-lbl in #1276
• Adding element name normalization to schema-fixer. Adding --expand-dicts option to example runner by @cmungall in #1284
• Added Slack link by @nlharris in #1289
• added link to FAQ: contributing by @nlharris in #1290
• yumlgen: use POST and add ability to name output file by @jankatins in #1293
• Support ifabsent in pydanticgen by @kevinschaper in #1252
• Pydantic gen: switch to external uri/curie by default, still accept native uri/curie. by @kervel in #1275
• Adding type-designator docs (not linked yet) by @cmungall in #1291
• Pydantic any_of range support by @kevinschaper in #1273
• replace pkg_resources methods with importlib methods by @sujaypatil96 in #1308
• Remove camelcasing of class name for type designator values by @kevinschaper in #1310
• fix mergeimports issue in docgen by @sujaypatil96 in #1309
• Handle local prefixes special when merging linkml files by @jankatins in #1295
• Add favicon to docs by @dalito in #1312
• Adding FAQ docs by @cmungall in #1321
• fix mergeimports handling in gendoc by @sujaypatil96 in #1313
• add dependency relationship between classes linked by a slot by @sujaypatil96 in #1316
• update poetry.lock file by @sujaypatil96 in #1323
• Fix errors in Actions by @sujaypatil96 in #1329
• fix class slot dependency relationships in mermaid diagram by @sujaypatil96 in #1327
• test case for ensuring domain_of for slot does not have dups by @sujaypatil96 in #1319
• owlgen - use either owl or OwlProfile as subset name (sync with linkml 1.6) by @cmungall in #1338
• First pass excelgen.py refactor with SchemaView by @sujaypatil96 in #1320
• Fix incorrect ifabsent generation. by @cmungall in #1335
• Trigger on push to main in addition to PR by @dalito in #1330
• Reverting to previous ifabsent behavior for default_ns. by @cmungall in #1343
• Adding FAQ entry on name clashes on imports by @cmungall in #1332
• jsonschemagen: use anyOf rather than oneOf for range class descendants by @kervel in #1342
• Set Poetry version to 1.3.2 in all workflows by @pkalita-lbl in #1358
• add test to ensure datetime validation works, fixes #606 by @cmungall in #1364
• 1.5 prerelease, redux by @cmungall in #1353

New Contributors

• @jankatins made their first contribution in #1233

Full Changelog: v1.4.0...v1.5.0