🎯 ChIP peak Annotation, Comparison and Visualization

Annotation helper tool for the manual curation of transposable element consensus sequences

This is the ensembldb development repository.

Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.

Creating and using (chemical) compound databases

NEAL (Nature+Energy Audio Labeller) is an open-source interactive audio data annotation tool.

High level functionality to support and simplify metabolomics data annotation.

The source code and results for different methods on annotating external testing datsets of human and mouse.

Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabolites by mass spectrometry in modern metabolomics is a prerequisite for elucidating this area. However, the identification of metabolites is a major bottleneck in traditional approaches hampering advances. Here…

These are tools for post GWAS analysis. Please see below link as a document for install and use.

R library to make a summarized visualization of textual information by network

A simple interface to the Human Protein Atlas

seq2Fun provides function to annotate protein or coding sequences with KEGG pathways

Takes output from DMRichR and performs statistical testing and visualization for CpG and genic annotation enrichments

High-throughput MS/MS annotation with a in-house database

Bundle of Useful scRNA-seq Gating Tools Extending seuRat

Scripts for .bed file genomic region annotation with various tools

De nove assembly and annotation of Fragilaria radians transcriptome

MORFEE: Mutation on Open Reading FramE annotation