atac-seq
Here are 45 public repositories matching this topic...
ATAC-seq and DNase-seq processing pipeline
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Jun 21, 2022 - Python
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
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Jun 20, 2024 - Python
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
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Jan 5, 2024 - Python
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
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Feb 5, 2024 - Python
Pipelines for NGS data preprocessing by the Bock lab and friends
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Aug 29, 2022 - Python
Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
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Jun 27, 2024 - Python
Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility
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Aug 30, 2022 - Python
A toolkit for NGS analysis with Python
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Jan 18, 2023 - Python
Sargasso disambiguates mixed-species high-throughput sequencing data.
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Feb 6, 2024 - Python
A toolkit for working with ATAC-seq data.
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Jun 11, 2024 - Python
Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)
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Nov 10, 2017 - Python
The ChIP-Seq peak calling algorithm using convolution neural networks
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Jan 18, 2021 - Python
Intrinsic bias estimation for improved analysis of bulk and single-cell chromatin accessibility profiles using SELMA
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Jun 28, 2023 - Python
Transcriptional and epigenetic signature of muscle tissue cells linked to atrophy
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Jul 17, 2023 - Python
Variational Auto Encoders for learning binding signatures of transcription factors
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Mar 14, 2024 - Python
Preprocessing pipeline for (sc)ATAC data
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Feb 22, 2022 - Python
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