Codes i wrote for the paper "genomic resources for Mediterranean fishes"

Merge in parallel, speeding up bcftools merge

This repository outlines steps to manage VCF files, including compressing, indexing, querying chromosomes, counting variants, and comparing multiple VCF files using BCFTools.

Convert SV VCFs to BED, a wrapper for bcftools query

🔬 Влияние меди на антибиотикорезистентность у синегнойной палочки

a tool for quickly getting the correct bcftools command

Repository for scripts used to estimate guppy (Poecilia reticulata) mutation rate.

1,674 S.cerevisiae genomics data

Code final year dynamic genome visualizer project.

bcftools singularity container

Nextflow resequencing pipeline with bwa-mem and freebayes

Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)

convert genotype array output into annotated IBD segments

The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.

This directory contains material that I've used in different courses

This repository contains code related to a conservation genomics project focused on the king rail, a threatened marsh bird.

This script filters false positive alleles from poolseq VCF file created with bcftools.

Repository for Docker image astrabert/silly-gat-kay info and changelog

The goal of this project is to create a R package and executable scripts to visualize variants in Variant Call Format (VCF) files and Bcftools processed tab-delimited files.

pipeline: from sra, bed, vcf to plink