Variant Calling Pipeline Using GATK4 and Nextflow
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Updated
Feb 16, 2023 - Nextflow
Variant Calling Pipeline Using GATK4 and Nextflow
Genotype Imputation Pipeline for H3Africa
Repository of Nextflow+BioContainers workflows
DEPRECIATED! Please use nf-core/tools instead
See the main fork of this repository here >>>
Projet de Hackathon du master AMI2B 2022 - Pipeline d'analyse RNA-Seq écrit en Nextflow
Reproducible evaluation of short read mappers
A pipeline for bioinformatics analysis of bacterial genomes
Pre-processing of multiplexed CRISPR / shRNA Screens (deprecated)
FusionFlow is a bioinformatic pipeline that enables the detection of gene fusions from RNA and DNA data.
Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.
Taxonomic profiling ONT metagenomics reads using minimap2
NextFlow pipeline for mitochondria sequence reconstruction
Align SARS-CoV-2 sequences against a reference genome, and trim UTR sequences
A nextflow pipeline for TCR repertoire building with MiXCR
A nextflow workflow to build referenceseeker DBs on the fly
Retrieve Files from VBCF Sequencing Facility
In this repository , I explained how we can implement Nextflow workflow and extend to AWS batch integration
A Nextflow Assembly Pipeline for Downstream Analysis of long reads (ONT) - Genome Assembly .
amazon aws batch implementation of nextflow/rnaseq-encode-nf tutorial
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