Tool for fully-automated inference of species trees from raw genome assemblies
-
Updated
Jun 3, 2024 - Python
Tool for fully-automated inference of species trees from raw genome assemblies
DeBasher: a Flow-Based Programming Extension for Bash
A modular annotation tool for genomic variants
Bystro genetic analysis (annotation, filtering, statistics)
Snakemake workflow for DamID-Seq analysis
Compute over Data framework for public, transparent, and optionally verifiable computation
VIPER is a user-friendly software for assembling and identifying viral genomes (currently SARS-CoV-2, Dengue, and Influenza), from Illumina sequencing data generated through genomic surveillance.
Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.
simplified cellranger for long-read data
runjob is a program for managing a group of related jobs running on a compute cluster
Infectious Disease Sequencing Platform
Tidy Common Workflow Language Tools and Workflows
a Python based pipeline for the purpose of analyzing human genomic data.
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
A snakemake pipeline to call structure variants from ONT data
An ensemble of functions for easier and quicker preliminary microbiome analyses
Simple library/pipeline to generate and handle Hi-C data.
Bioinformatics Educational Resources
A set of processes/pipelines for bioinformatics
Add a description, image, and links to the bioinformatics-pipeline topic page so that developers can more easily learn about it.
To associate your repository with the bioinformatics-pipeline topic, visit your repo's landing page and select "manage topics."