A set of processes/pipelines for bioinformatics
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Updated
Jul 3, 2024 - Python
A set of processes/pipelines for bioinformatics
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
Bystro genetic analysis (annotation, filtering, statistics)
Data processing scripts for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.
Various codes and scripts used during AI research. Orginally developed in the Binary_label_predictions_with_CNNs repository
histone modification hospot
Find motifs enriched around prominent crosslinks
Recopilación de los resultados y herramientas generadas para la tesis de maestría "Estudio de la relación estructura-función en interfaces de complejos RNA-proteína", SBG-UNQ
This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!
A Python script to map PDB ID + chain ID to UniProt ID.
Software tools to extract mRNA's features from a list of ENSEMBL gene IDs.
Explore biomolecular pathways in Reactome from the command-line or a Python script
Code for design of diagnostic PCR primers, and metabarcoding markers.
Find groups of motifs around genomic landmarks of interest
A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
Maps the evaluation value of phylogenetic tree to another tree
Determines the most probable sequences missing from a greater set of genomic reads.
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