Open-source software for exploring and analyzing large, high-dimensional image-derived data.
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Updated
Mar 12, 2024 - Python
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
Python package for processing image-based profiling data
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
Running cellprofiler on eddie3 / SGE clusters
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
Install script for CellProfiler v3.1.9 on Ubuntu 18.04.3 LTS(+) - bash, installs python3.6, unet and classify
Tools for Processing Results from CellPainting Assay
Analyzing Cell Painting results with Dask and Pandas - not yet ready for use by others
Collect distributed cellprofiler results into sqlite databases.
A collection of python modules and command line tools for processing image-based RNAi screens.
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