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common-workflow-language

CWL documents describe workflows made of command line data analysis tools in a portable, reproducible, and reusable fashion.

Here are 17 public repositories matching this topic...

DataBiosphere / toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

python kubernetes aws workflow pipeline slurm mesos wdl common-workflow-language gridengine cwl workflow-description-language

Updated Oct 31, 2024
Python

cwltool

common-workflow-language / cwltool

Common Workflow Language reference implementation

science containers common-workflow-language cwl workflows commonwl sciworkflows

Updated Oct 24, 2024
Python

Barski-lab / cwl-airflow

Python package to extend Airflow functionality with CWL1.1 support

workflow containers common-workflow-language cwl dag commonwl cwl-airflow cwl-descriptor

Updated Oct 25, 2023
Python

benten

rabix / benten

A language server for Common Workflow Language

editor workflow language-server ide common-workflow-language cwl cwl-documents

Updated Dec 6, 2023
Python

sbg / sevenbridges-python

SevenBridges Python Api bindings

bioinformatics api-client sevenbridges common-workflow-language rest-client

Updated Oct 18, 2024
Python

PMCC-BioinformaticsCore / janis

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

python workflow wdl common-workflow-language cwl workflow-description-language

Updated Sep 17, 2023
Python

cwl-utils

common-workflow-language / cwl-utils

Python utilities for CWL

common-workflow-language cwl commonwl

Updated Oct 23, 2024
Python

crim-ca / weaver

Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package

workflow web-application remote-execution common-workflow-language ogc wps cwl ems ades web-processing-service

Updated Oct 30, 2024
Python

sbg / sevenbridges-cwl

Seven Bridges Python library for programatic generation of CWL workflows.

python bioinformatics sevenbridges common-workflow-language cwl

Updated Oct 26, 2022
Python

cwltest

common-workflow-language / cwltest

Framework for testing CWL tools and workflows

common-workflow-language cwl

Updated Oct 23, 2024
Python

common-workflow-lab / ipython2cwl

IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.

docker jupyter jupyter-notebook common-workflow-language cwl

Updated Nov 3, 2022
Python

suecharo / genpei

An implementation of GA4GH Workflow Execution Service Standard as a microservice.

docker workflow common-workflow-language cwltool ga4gh-wes

Updated May 21, 2020
Python

giannisdoukas / CWLJNIKernel

Jupyter Notebook Kernel for Common Workflow Language

jupyter-notebook common-workflow-language cwl workflows

Updated Aug 23, 2021
Python

common-workflow-lab / cwl-language-server

A Language Server for CWL

language-server common-workflow-language cwl commonwl

Updated Jun 3, 2022
Python

Terradue / pycalrissian

Python client for Calrissian - CWL on kubernetes

python kubernetes common-workflow-language cwl

Updated Sep 17, 2024
Python

suecharo / agodashi

An API server for parsing workflows written in workflow languages.

workflow common-workflow-language

Updated Jul 5, 2020
Python

wtsi-hgi / cwl-dummy

Generates CWL files that do nothing.

common-workflow-language cwl

Updated Sep 7, 2018
Python

Created by Peter Amstutz, John Chilton, Michael R. Crusoe, Nebojša Tijanić, and the CWL Community

Released January 2015

Followers: 13 followers
Organization: common-workflow-language
Website: www.commonwl.org
Wikipedia: Wikipedia