Coverage Of COntigs Alignment
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Updated
Dec 4, 2018 - C++
#
contigs
Here are 8 public repositories matching this topic...
Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints
visualization
bioinformatics
pipeline
genome
mapping
scaffold
dna
alignment
circos
synteny
act
bioinformatics-analysis
chromosome
contigs
assemblies
smalt
misjoint
rearrengment
inter-chromosomes
minimap2
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Updated
May 24, 2020 - C++
A package for fast genomic sequences manipulation or interrogation
python
fast
gzip
genomics
cpp
scaffold
python-script
fasta
fastq
dna-sequences
sequences
contigs
seq-factotum
calculate-stats
print-fasta
fq2fa
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Updated
May 16, 2021 - C++
hierarchical clustering of DNA sequence using upcxx
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Updated
Sep 13, 2022 - C++
Split a multifasta file into many fasta files containing a single sequence, or extract a list of sequences/contigs. Supports compressed input and output files.
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Updated
Oct 2, 2023 - C++
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
python
bioinformatics
pipeline
genomics
assembly
docker-image
polymorphic
gap
closing
fasta
scaffolding
assembled-contigs
genome-assembly
paired-end
contigs
heterozygous
mate-pairs
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Updated
Dec 15, 2023 - C++
Scalable long read self-correction and assembly polishing with multiple sequence alignment
assembly
ngs
consensus
correction
long
self
msa
reads
contigs
long-reads
multiple-sequence-alignment
polishing
self-correction
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Updated
Feb 6, 2024 - C++
Wally: Visualization of aligned sequencing reads and contigs
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Updated
Sep 20, 2024 - C++
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