Multiple Objective Optimization work for optimizing aptamer binding to new targets done in collaboration with Chris Knight and Josh Knowles
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Updated
Nov 19, 2017 - C++
Multiple Objective Optimization work for optimizing aptamer binding to new targets done in collaboration with Chris Knight and Josh Knowles
MONKEY is a set of programs designed to search alignments of non-coding DNA sequence for matches to matrices representing the sequence specificity of transcription factors
Challenges of the Advanced Algorithms and Parallel Computing course
High performance tools for analyzing coronavirus genome
An algorithm for finding SNPs of a long read compared to a reference genome
Approximate pattern matching with Counting Filter on q-grams using SSE instructions (CF2)
Archival Compression for hiGh-Throughput sequeNcing data
hierarchical clustering of DNA sequence using upcxx
This is a project for Bioinformatics class. It's about finding mutations using 3th gen sequencing method.
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
Proof Of Concept for simple Base-2 binary to Base-4 DNA-code representation conversion
Translation amino acid sequence to DNA sequence.
Basic seed-and-extend DNA sequence read aligner
A package for fast genomic sequences manipulation or interrogation
this CLI finds the repeated STRs in a given DNA sequence
toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
BME3160 Bioinformatics Lecture examples in C++ and Perl
This project implements substring search and sequence alignment algorithms for molecular sequences analysis. It includes the Rabin-Karp algorithm for substring search and the Needleman-Wunsch algorithm for sequence alignment. Developed in C++17, the code follows Google Style and includes a Makefile for building and testing the program.
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