Same species annotation lift over pipeline.

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

Genome Annotation for the Masses

GeneValidator: Identify problems with predicted genes

Python3 wrapper for parallelized gene prediction using Prodigal

Scalable high-throughput short-read open reading frame prediction

Nextflow pipeline for genome annotation of protein-coding genes

Cpp Programs for feature extraction

iPat allows you to perform GWAS and GS with drags and clicks!

Scans fasta sequences for putative viruses - uses prokka, blast, and hhpred to predict ORFs and gene products

ncRNA identification, annotation and functional prediction

Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.

Deep learning based method called hist2RNA to predict the expression of genes using digital images of stained tissue samples

Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS

Prediction of metastasis sites for breast cancer cells

EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format

This project deals with predicting the location of a gene in the human genome based off experimental data

Prediction of genes in genomes with ambiguous stop codons

A comprehensive microbial genomic analysis pipeline that includes quality control, gene prediction, annotation, and comparative genomic analysis for identifying and visualizing key genetic features in microbial genomes.

automatically create GLIMMER training materials from GenBank records