A genome visualization python package for comparative genomics

Python programs for processing GFF3 files

An efficient way to convert gff3 annotation files into EMBL format ready to submit.

Convert sequence IDs between ucsc/refseq/genbank

A Python package for Biopython that gives feature annotations from GenBank records a new and better life

JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage

Genome annotation data analysis and management implemented in pure Python

Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.

tools for handling gff files

A tool to aggregate and load TB data to Neo4j

Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow

read VCF and select synonymous or non-synonymous coding variants

Convert gtf to gff3 for JBrowse

parse GFF and output a CSV file for gggenes. 解析并将 gff 中需要的内容输出到 csv 文件中以供 R 包 gggenes 调用。

analyzer for phytozome gff files and pacid for genes.

A little script to print a gff3 file

stitching coding regions from exon alignments for the protein to genome alignments.

This tool will convert GFF3 files into DDBJ annotation files. It was created to work with Braker2 generated GFF files, but should work with any other GFF3 file as well.

Toolkit for handling genome annotations in various formats. Python3.

ease of access gff files from tair for reading tair ids.