IQ-TREE software version 2: phylogenetics by maximum likelihood
The Open Free Energy toolkit
A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
bedtools - the swiss army knife for genome arithmetic
Python implementation of the multistate Bennett acceptance ratio (MBAR)
Experiments with expanded ensembles to explore chemical space
macromolecular crystallography library and utilities
Identification of Protein-Ligand Binding Sites using dipolar EPR data
Powerful, efficient particle trajectory analysis in scientific Python.
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
A comprehensive library for computational molecular biology
Computational Crystallography Toolbox
Python interface of cpptraj
A Python Package for Protein Dynamics Analysis
A versatile pairwise aligner for genomic and spliced nucleotide sequences
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Official git repository for Biopython (originally converted from CVS)
🚂 Python API for Emma's Markov Model Algorithms 🚂
The second version of the Kraken taxonomic sequence classification system
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