Some useful RDKit functions

Official git repository for Biopython (originally converted from CVS)

A project (and object) for storing, manipulating, and converting molecular mechanics data.

Web-based molecule sketcher

Parameter/topology editor and molecular simulator

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

A comprehensive library for computational molecular biology

bedtools - the swiss army knife for genome arithmetic

The Chemistry Development Kit

Tools (written in C using htslib) for manipulating next-generation sequencing data

macromolecular crystallography library and utilities

MoleculeKit: Your favorite molecule manipulation kit

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

Molecular Processing Made Easy.

C library for high-throughput sequencing data formats

Library for reading and writing chemistry files

PDBFixer fixes problems in PDB files

Periodic table, physical constants, and molecule parsing for quantum chemistry.

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

Annotated data.