Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
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Updated
Jun 1, 2024 - Python
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
A genome visualization python package for comparative genomics
Build a partitioned pangenome graph from microbial genomes
From genomes to phenotypes: Traitar, the microbial trait analyzer
A tool for drawing ANI clustermap between all-vs-all microbial genomes
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
Microbial Genome Circular plotting tool for comparative genomics using Circos
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
🦠📇 Genomes to report pipeline - for Bacteria and Archaea
A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
Easy-to-use web application for visualization and comparison of genomes in Genbank file
CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
Tools for phylogenetic data analysis including visualization and cluster-computing support.
Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies
Python implementation of barrnap (Bacterial ribosomal RNA predictor)
In silico serotype prediction for Listeria monocytogenes
Evaluating Nanopore-based bacterial variant calling
A grammar for describing microbial genotypes and phenotypes
A reference-free statistical approach to diversity-generating & mobile genetic element discovery
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