Nanopore sequence read simulator

Training models for basecalling Oxford Nanopore reads

Identification of differential RNA modifications from nanopore direct RNA sequencing

Detecting methylation using signal-level features from Nanopore sequencing reads

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

Tools and software library developed by the ONT Applications group

NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)

Transcriptome long-read orientation with Deep Learning

LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.

rMETL - realignment-based Mobile Element insertion detection Tool for Long read

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

A fully-equipped, fast, memory-efficient pre-processor for ONT transcriptomic data

A package for training strand-specific profile HMMs for primer sets from real Nanopore data

Scripts for processing and error correction of Nanopore reads generated by rolling circle amplification

SegPore is a software to segment the raw Nanopore direct RNA sequence and estimate the RNA modifications.

Consensus calling for Amplicon Nanopore Sequencing

Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).

Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

a deep neural network model for mapping modifications in nanopore Long-read sequencing data