ncbi
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simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
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Jun 24, 2024 - Python
ClinVar Submission API Made Easy
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Jun 24, 2024 - Python
Program and package that retrieves nucleotide coding sequences from NCBI that correspond to a set of input protein sequences.
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Jun 24, 2024 - Python
Turbocharge a PubMed literature rather than clicking and clicking and clicking on Google Scholar
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Jun 20, 2024 - Python
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
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Jun 19, 2024 - Python
Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files
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Jun 19, 2024 - Python
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
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Jun 17, 2024 - Jupyter Notebook
`nwr` is a command line tool for working with NCBI taxonomy, Newick files and assembly reports
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Jun 8, 2024 - Rust
Python Clinical Variant Tools This repository hosts Python scripts designed to streamline the retrieval of clinical variant information from authoritative sources such as ClinVar and DisGeNET. These tools facilitate efficient data extraction and analysis for researchers and professionals in the field of genetics and genomics.
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Jun 3, 2024 - Python
Bot that toots when NCBI updates their taxonomy database
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May 28, 2024 - Python
multiprocessed ncbi edirect
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May 23, 2024 - Python
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
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Jun 18, 2024 - Python
With Tkinter GUI. Provides autocomplete suggestions for organism names from a SQLite database, using Levenshtein distance for string matching.
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May 10, 2024 - Python
Genome Metadata Visualizer is a series of scripts written to process and visualise genome metadata after it is pulled from NCBI using the dataset and dataformat command line tools.
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Apr 18, 2024 - HTML
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