Repository detailing a Nextflow pipeline to run mpileup variant callling on TF footprints.
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Updated
Mar 22, 2024 - HTML
Repository detailing a Nextflow pipeline to run mpileup variant callling on TF footprints.
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
Nextflow Tutorial - Variant Calling Edition
Nextflow workflow for basic HiC data processing
SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
Excel report from bioinformatics analysis of viral seq data with nf-core/viralrecon and other Nextflow workflows
Website for the Workflows Community of Practice at the Wellcome Genome Campus
Working through NextFlow tutorials. See https://github.com/nextflow-io/training
Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
Proof of concept of a RNA-Seq pipeline from reads to count matrix (including quality control) with Nextflow and additional example RNA-Seq analysis in R
compare sequences to a shared root reference sequence.
Exploring Bioinformatics pipelines
A demo workflow showing download, extraction, and compression of sequences from SRA.
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