An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
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Updated
Jul 3, 2024 - C++
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
SortMeRNA: next-generation sequence filtering and alignment tool
UGENE is free open-source cross-platform bioinformatics software
Rare variant test software for next generation sequencing data
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
BWA-MEME: Faster BWA-MEM2 using learned-index
A method for variant graph genotyping based on exact alignment of k-mers
Scalable long read self-correction and assembly polishing with multiple sequence alignment
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
Method to optimally select samples for validation and resequencing
FQSqueezer - FASTQ compressor based on k-mer statistics
Estimation of per-individual inbreeding tracts under a probabilistic framework
Official code repository for JAX-CNV
Estimation of pairwise distances under a probabilistic framework
Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads
A fully integrated K-mer Informed Toolkit for Bioinformatics
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