A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
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Updated
Feb 12, 2024 - Shell
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
VAPiD: Viral Annotation and Identification Pipeline
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
Micro 612 genomics workshop
A simplified pipeline for ctDNA sequencing data analysis
GitHub for the SIB courses NGS - Genome variant analysis
Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi
Reconstruction and analysis of viral and host genomes at multi-organ level
less like viewer for fastq files
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
Utilities for analyzing next generation sequencing data.
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
Automated Pipeline for Variant/Haplotype Calling and Filtering
eXome Hidden Markov model (XHMM) - Copy Number Variants (CNVs) from Whole Exome Sequencing Data
Pipeline to reconstruct the targeted dominant consensus genome of viral samples and analyze their within-host variability.
Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.
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