MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
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Updated
Nov 30, 2022 - Python
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
Analysis of Sars Cov-2 Gene Mutations using Python Numpy and Matplotlib
A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.
Protein to RNA reverse translation
GenSkew is an application for computing and plotting nucleotide skew data.
deep learning experiments on biological sequences with PyTorch
Used for counting the number of all four nucleotides and finding the percentage number of each of them
This is a web application to count the nucleotides composition in a DNA sequence sample.
Small programs to parse and analyze sequence files. Misc programs
A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.
A Python script that implements a two player strategic game with two chromosomes having length n and m of nucleotides respectively. In each Round of the game a player can destroy one of the chromosomes and split the other into two non-empty parts. The player who deletes the last nucleotide wins.
🧬 Python utilities for working with nucleotide sequence strings.
Filter alignments on sequence length and/or identity of first nucleotide.
Translation of the FASTA file with genetic code into aminoacid code.
Narrowly, Find sequences including nucleotide(or amino acid) spacers (Broadly, you can find the speific sequences of front and back while ignoring the middle sequences), and Write the result of finding them to csv files.(Language: Python3.9)
A tool to find amino acids associated with RNA and DNA nucleotide chains.
Produces PDB files from given sequences.
A Python script that implements a two player strategic game with two sequences of length n and m nucleotides respectively. At each Round of the game a player can remove a random number of nucleotides from one sequence or the same number of nucleotides from both sequences. The player who removes the last nucleotide wins.
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