Taxon-aware analysis of clustered protein sequences
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Updated
Jul 1, 2024 - Python
Taxon-aware analysis of clustered protein sequences
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
A high performance tool to identify orthologs and paralogs across genomes.
a broadly applicable tool for automated gene identification and retrieval
Protein orthologous group assignment with deep learning
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
Use Thor's Axe to cut exons into their evolutionary building blocks ⚡
Feature-aware Directed OrtholoG search
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
Tree-based orthology inference with functionality for reducing contamination
A snakemake workflow for the OrthoEvol python package.
Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach
A stand-alone tool for evaluating simple statistics of orthologs
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