Information and scripts for the CropAndWeed Dataset
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Updated
Apr 22, 2023 - Python
Information and scripts for the CropAndWeed Dataset
Self-Supervised Vision Transformers for multiplexed imaging datasets
Plant Phenotyping APP
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
3-Demeter Capture is a tool for building 3-D point clouds from images
Sentinel-2 Crop Trait Retrieval Using Physiological and Phenological Priors from Field Phenotyping (Graf et al., 2023, RSE)
PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.
A python package for agricultural phenotypic trait extraction from 2D image sets via 3D reconstruction and analysis of 3D point clouds.
A phenotyping pipeline for Python
Scanomatic
Batch process FLIR radiometric (thermal) JPEGs and generate clean lossless images with consistent scale and palette
PyTorch library for MIMIC III Benchmark experiments
Computation of root phenes from 3D point clouds.
Modular, Scalable Phenomic Data Processing Pipelines
deep prototype learning for EHR data
Translational Computational Phenotyping
Leaf disc scoring pipeline for estimating the area of infection on leaf discs from inoculation experiments.
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