National Microbiome Data Collaborative (NMDC) unified data model
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Updated
Jun 4, 2024 - Python
National Microbiome Data Collaborative (NMDC) unified data model
Proteomics Mass Spectrometry Datasets for Machine Learning
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
Absolute quantification package based on quantms.io
A spectacularly simple package for working with peptide sequences.
Python packages for easy execution of proteogenomic workflow
A python library with scripts and helpers classes for quantms workflow
A Python API for the RCSB Protein Data Bank (PDB)
Collisional cross-section prediction for modified peptides
Multi-Omics Peptide Generator
mzSpecLib: A standard format to exchange/distribute spectral libraries
Export MS Annika crosslink results to different formats.
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
Summarize post-translationally modified amino acid sites, peptides and proteins for Proteome Discoverer output
Python framework for Deep Learning in Proteomics
Analysis platform for large-scale dose-dependent data
A Python wrapper for the Chaparral API.
Package to study time series (or other series) multi-omics patterns of expresssion with replicates
🪆🦖 A snakemake wrapper around Nesvilab's FragPipe-CLI. In a perfect world, this pipeline was based on Sage.
A deep learning toolkit for mass spectrometry
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