Perl implementation of Markov Chain for the course BIO331

Cancer RiboSNitch-enriched elements detector

Compute opening energy z scores of RNA

A Perl program that implements DNA translation to amino acit sequence

Split and decompose structural RNA multiple sequence alignments

automating find_circ

RNASeq pipeline

Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release

Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network

Variant calling from RNA based sequencing data.

RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

Perl, Bash shell, and R scripts for m6A-SAC-seq data analysis.

A pipeline and collection of tools to characterize RNA structure conservation, built around the ViennaRNA Package.

Perl, R, Python, and Bash Shell source codes for high-throughput sequencing (the 2nd, 3rd, and 4th generation sequencing for DNA, RNA, and Protein) data analysis by integrating lots of open-source tools or softwares.

🔬 ♌ Bacterial ribosomal RNA predictor

Roddy RNA-seq Workflow Plugin

ROAD facilitates the design of RNA nanostructures using the RNA origami method.