Quality Control on fastq files

MCTS-RNA is a computational tool for solving RNA inverse folding problem with controlling the GC-content of the RNA sequence very precisely.

Calculates a sequence of RNA that will act as a Toehold Switch that will detect a given MicroRNA sequence.

Rna Alignment With Tree Edit Distance

An implementation of the Min-Max algorithm to determine the rareness of the codons within a base pair sequence.

Basic tool for amino acid / protein translation, yet it accepts both RNA and DNA as input and can predict their entire possible sequence. More refinement will be done soon, such as incorporating it all into classes, the reverse list prediction, stop and start codons.

A deep learning frame for RNA structure prediction.

Small parts from my master thesis projects

Initial repository, later developed into nextPARS (https://github.com/Gabaldonlab/nextPARS/).

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

Python package for covariance analysis on alignments of biological sequences.

Workflow scripts for merging NGS raw data (lanes)

Epitope prediction workflow based on FRED.

CRISPR Target Design

RNAseq workflow

Criação de Rede Neural Multilayer Perceptron capaz de classificar corretamente casos de câncer de mama

RNA Fusion Detection and Quantification