Modelling Course

A simple program that uses parallel processing to detect deletions in fasta files relative to a reference genome.

Independent bioinformatics project on the origin of SARS-CoV-2 utilizing the Levenshtein distance algorithm. Uses real-world genome data of various animal coronaviruses as points of comparison.

Manuscript, source codes and data sets on estimating Singapore’s lower-bound SARS-CoV-2 Infection Trend In 2020.

This program was written during the COVID-19 pandemic, as a way to demonstrate that manual "contact tracing" can be spoofed.

Flask web application for pattern matching in a genome sequence

WashU Virus Genome Browser Documentation

Python port of "Estimated Airborne Decay of SARS-CoV-2 (virus that causes COVID-19)" by the DHS

A utility for creating and exploring variants of the SARS-CoV-2 Spike protein sequences.

Pipeline for analyses of multiple pathogens, like SARS-CoV-2 with positivity rate analyses

Big Data analysis with PySpark. Multiple SARS-CoV-2 and COVID-19 medical datasets are being used.

An alignment-free method capable of processing and counting k-mers in a reasonable time, while evaluating multiple values of the k parameter concurrently.

COVID CXR images classification using CNN

Matrix bot tracking SARS-COV-2 statistics.

Backend routines for genomic surveillance data processing of Rede Genomica Fiocruz

convert gene to genome coordinates

Scripts for SARS-CoV2 genome assembly and analysis

PHP project to track Coronavirus SARS-CoV-2 in Italy

Cluster Investigation & Virus Epidemiology Tool