Deep learning to solve RNA design puzzles

RiboNucleic Acid (RNA) Language Model

Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes

LLM for Drug Editing, ICLR 2024

Researching the forward-backward algorithm

Cartoon mesh generation for secondary structure of proteins in C++

CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid mod…

Python library and CLI for submitting jobs to JPred - A Protein Secondary Structure Prediction Server

State-of-the-art ab initio prediction of 1D protein structure annotations

Parallel solution for local RNA secondary structure analysis

Interactive visualization of cotranscriptional folding

Evaluation of the statistical reproducibility of high-throughput structural analyses for a robust RNA reactivity classification

State of the art software for RNA sequence design. The first to solve the Eterna benchmark!

CB513 datasets for Protein Secondary Structure Prediction

RNA/DNA secondary structure library for processing it as a graph, reading and writing

Framework for benchmarking RNA secondary structure prediction algorithms.

Protein Secondary Structure Analysis and Visualization for Trajectories

OpenAPI specification for the API of the Protein Topology Graph Library (PTLG).

[SU/VT17] KB8024 - Protein Predictor Project (SupervisedMachineLearning)

This GitHub repository contains a machine learning project focused on predicting the secondary structure of proteins using Support Vector Machines (SVM) as the underlying predictive model. The predictive power of SVM is further optimized through hyperparameter tuning using GridSearch.