Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
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Updated
Jul 7, 2023 - Python
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
A python parser to simplify and build the VCF (Variant Call Format).
Intersect multiple VCF files with haplotype awareness
create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
Visualize microbial evolution at the SNP level!
A simple Python script for extracting images out of an "SMS Backup & Restore" backup.
CNV analysis based on the depth of coverage of Illumina data
VCF file synthesiser with random variants
vSNP -- validate SNPs
A utility to merge a large number of VCF files incrementally
A python library to develop genomic data simulators
Collection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.
Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)
API to read, write, and filter DNA sequence alignment files
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