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Merge BRIDGE into main in prep for release v18.0.0 #744

Merged
merged 477 commits into from
Mar 22, 2024
Merged

Merge BRIDGE into main in prep for release v18.0.0 #744

merged 477 commits into from
Mar 22, 2024
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Oct 26, 2023

  1. update repos, add option to ldas_setup

    @biljanaorescanin
    biljanaorescanin committed Oct 26, 2023
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  2. Update Baselibs in CI

    @mathomp4
    mathomp4 committed Oct 26, 2023
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  3. Update to ESMA_env v4.20.5

    @mathomp4
    mathomp4 committed Oct 26, 2023
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  4. Add code for Milan

    @mathomp4
    mathomp4 committed Oct 26, 2023
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  5. Some update for the readme

    @mathomp4
    mathomp4 committed Oct 26, 2023
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  6. relaxing SBATCH constraints (ldas_setup)

    @gmao-rreichle
    gmao-rreichle committed Oct 26, 2023
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  7. milan nodes are on SLES15 cas and sky on SLES12

    @biljanaorescanin
    biljanaorescanin committed Oct 26, 2023
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  8. add range to scaled obs

    @amfox37
    amfox37 committed Oct 26, 2023
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  9. Merge branch 'develop' into feature/amfox/metop_sm

    @amfox37
    amfox37 committed Oct 26, 2023
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  10. update the path for forcing in case of coupling with adas 

     	modified:   Applications/LDAS_App/lenkf.j.template
    @saraqzhang
    saraqzhang committed Oct 26, 2023
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  11. more fixes for MODIS SCF reader (clsm_ensupd_read_obs.F90)

    @gmao-rreichle
    gmao-rreichle committed Oct 26, 2023
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  12. change FOV for MODIS SCF obs back to 0. (LDASsa_DEFAULT_inputs_ensupd… 

    ….nml)
    @gmao-rreichle
    gmao-rreichle committed Oct 26, 2023
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  13. minimal edit in echo string (lenkf.j.template)

    @gmao-rreichle
    gmao-rreichle committed Oct 26, 2023
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  14. update met forcing path when coupled with ADAS (#682)

    @gmao-rreichle
    gmao-rreichle committed Oct 26, 2023
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Commits on Oct 27, 2023

  1. Merge branch 'develop' into feature/borescan_update_components

    @biljanaorescanin
    biljanaorescanin committed Oct 27, 2023
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  2. change according to the change in remap_restarts packge

    @weiyuan-jiang
    weiyuan-jiang committed Oct 27, 2023
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  3. add latlon grid clim stats matlab scripts

    @amfox37
    amfox37 committed Oct 27, 2023
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  4. fixed missing init of lat/lon in MODIS SCF reader; changed variable n… 

    …ame for clarity (clsm_ensupd_read_obs.F90)
    @gmao-rreichle
    gmao-rreichle committed Oct 27, 2023
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  5. Merge branch 'develop' into feature/rreichle/MODIS_snow_cover_fractio… 

    …n_assimilation
    @gmao-rreichle
    gmao-rreichle committed Oct 27, 2023
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Commits on Oct 30, 2023

  1. Merge branch 'develop' into feature/amfox/metop_sm

    @gmao-rreichle
    gmao-rreichle committed Oct 30, 2023
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Commits on Nov 1, 2023

  1. Merge branch 'develop' into feature/wjiang/new_bcs_structure

    @biljanaorescanin
    biljanaorescanin committed Nov 1, 2023
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  2. fix import name

    @weiyuan-jiang
    weiyuan-jiang committed Nov 1, 2023
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  3. Merge branch 'feature/wjiang/new_bcs_structure' of github.com:GEOS-ES… 

    …M/GEOSldas into feature/wjiang/new_bcs_structure
    @weiyuan-jiang
    weiyuan-jiang committed Nov 1, 2023
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Commits on Nov 2, 2023

  1. Merge branch 'develop' into feature/wjiang/optimize_fft

    @biljanaorescanin
    biljanaorescanin committed Nov 2, 2023
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Commits on Nov 6, 2023

  1. minimal white space change

    @gmao-rreichle
    gmao-rreichle committed Nov 6, 2023
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  2. renamed output_incr_etc() to output_ObsFcstAna_wrapper() for clarity … 

    …(clsm_ensupd_enkf_update.F90, GEOS_LandAssimGridComp.F90)
    @gmao-rreichle
    gmao-rreichle committed Nov 6, 2023
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  3. renamed max_cat_diagS() to cat_diagS_max() for consistency with cat_d… 

    …iagS_sqrt() (catch_types.F90, GEOS_LandAssimGridComp.F90)
    @gmao-rreichle
    gmao-rreichle committed Nov 6, 2023
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  4. fixed typos in comments, white-space/indent changes (GEOS_LandAssimGr… 

    …idComp.F90, clsm_ensupd_enkf_update.F90, GEOS_LandPertGridComp.F90, LDAS_PertRoutines.F90, land_pert.F90, random_fields.F90)
    @gmao-rreichle
    gmao-rreichle committed Nov 6, 2023
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  5. minimal white-space changes (clsm_ensupd_upd_routines.F90)

    @gmao-rreichle
    gmao-rreichle committed Nov 6, 2023
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Commits on Nov 7, 2023

  1. bug fix to avoid NaN for ens std-dev in debug mode; implementation ch… 

    …anges for FFT used in perturbations; cleanup (#679)
    @gmao-rreichle
    gmao-rreichle committed Nov 7, 2023
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  2. Merge branch 'develop' into feature/amfox/metop_sm

    @gmao-rreichle
    gmao-rreichle committed Nov 7, 2023
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  3. Merge branch 'develop' into feature/borescan_update_components

    @biljanaorescanin
    biljanaorescanin committed Nov 7, 2023
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  4. Merge branch 'develop' into feature/wjiang/new_bcs_structure

    @biljanaorescanin
    biljanaorescanin committed Nov 7, 2023
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  5. Merge branch 'develop' into feature/rreichle/MODIS_snow_cover_fractio… 

    …n_assimilation (manually resolved conflict in clsm_ensupd_enkf_update.F90)
    @gmao-rreichle
    gmao-rreichle committed Nov 7, 2023
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  6. make update type 1 work

    @amfox37
    amfox37 committed Nov 7, 2023
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  7. Merge branch 'feature/amfox/metop_sm' of github.com:GEOS-ESM/GEOSldas… 

    … into feature/amfox/metop_sm
    @amfox37
    amfox37 committed Nov 7, 2023
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Commits on Nov 9, 2023

  1. update NCEP_Shared to v1.3.0

    @amfox37
    amfox37 committed Nov 9, 2023
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Commits on Nov 11, 2023

  1. Merge branch 'feature/amfox/smap_ascat' of github.com:GEOS-ESM/GEOSld… 

    …as into feature/amfox/smap_ascat
    @amfox37
    amfox37 committed Nov 11, 2023
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Commits on Nov 13, 2023

  1. Merge branch 'feature/amfox/metop_sm' of github.com:GEOS-ESM/GEOSldas… 

    … into feature/amfox/metop_sm
    @amfox37
    amfox37 committed Nov 13, 2023
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  2. Bug fix in new MODIS SCF obs reader (clsm_ensupd_read_obs.F90)

    @gmao-rreichle
    gmao-rreichle committed Nov 13, 2023
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Commits on Nov 14, 2023

  1. minor edit to optimize MODIS SCF obs reader (clsm_ensupd_read_obs.F90)

    @gmao-rreichle
    gmao-rreichle committed Nov 14, 2023
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Commits on Nov 22, 2023

  1. allocation of mwRTM_param

    @amfox37
    amfox37 committed Nov 22, 2023
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  2. bugfix for ASCAT_sm_std

    @amfox37
    amfox37 committed Nov 22, 2023
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  3. 1. Move call get_vegopacity and nod_data_check 

    into conditional
2. Allocate mwRTM_param if not done so before
    @amfox37
    amfox37 committed Nov 22, 2023
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Commits on Nov 28, 2023

  1. Merge branch 'feature/amfox/metop_sm' into feature/amfox/smap_ascat

    @amfox37
    amfox37 committed Nov 28, 2023
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Commits on Nov 30, 2023

  1. removed code and text related to haswell nodes (extinct) and milan no… 

    …des (GEOSldas not yet ready for milan)
    @gmao-rreichle
    gmao-rreichle committed Nov 30, 2023
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  2. minimal edits of comment lines in ASCAT reader (clsm_ensupd_read_obs.… 

    …F90)
    @gmao-rreichle
    gmao-rreichle committed Nov 30, 2023
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Commits on Dec 1, 2023

  1. update repos

    @biljanaorescanin
    biljanaorescanin committed Dec 1, 2023
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  2. update baselibs

    @biljanaorescanin
    biljanaorescanin committed Dec 1, 2023
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Commits on Dec 3, 2023

  1. Update versions of linked repos; removed code and comments related to… 

    … Haswell nodes

Baselibs:  v7.16.0
ESMA_env:  v4.23.0
ESMA_cmake:  v3.36.0
GMAO_Shared:  v1.9.6
GEOS_Util:  v2.0.3
MAPL:  v2.42.1
    @gmao-rreichle
    gmao-rreichle committed Dec 3, 2023
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  2. Merge branch 'develop' into bugfix/amfox/not_using_mwrtm

    @gmao-rreichle
    gmao-rreichle committed Dec 3, 2023
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  3. Merge branch 'develop' into feature/wjiang/new_bcs_structure

    @gmao-rreichle
    gmao-rreichle committed Dec 3, 2023
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  4. Merge branch 'develop' into feature/amfox/metop_sm

    @gmao-rreichle
    gmao-rreichle committed Dec 3, 2023
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  5. Merge branch 'develop' into feature/rreichle/MODIS_snow_cover_fractio… 

    …n_assimilation
    @gmao-rreichle
    gmao-rreichle committed Dec 3, 2023
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Commits on Dec 4, 2023

  1. adapt to new remap_restart

    @weiyuan-jiang
    weiyuan-jiang committed Dec 4, 2023
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  2. Add reading GEOSIT forcing data

    @gmao-qliu
    gmao-qliu committed Dec 4, 2023
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Commits on Dec 5, 2023

  1. fix minor typo

    @gmao-qliu
    gmao-qliu committed Dec 5, 2023
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  2. minor edits for GEOS-IT forcing (LDAS_Forcing.F90)

    @gmao-rreichle
    gmao-rreichle committed Dec 5, 2023
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  3. fixed character array syntax for GEOSIT_defs (LDAS_Forcing.F90)

    @gmao-rreichle
    gmao-rreichle committed Dec 5, 2023
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  4. nicer way of character array constructor for GEOSIT_defs (LDAS_Forcin… 

    …g.F90)
    @gmao-rreichle
    gmao-rreichle committed Dec 5, 2023
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  5. fix error in previous commit for GEOS-IT (LDAS_Forcing.F90)

    @gmao-rreichle
    gmao-rreichle committed Dec 5, 2023
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Commits on Dec 6, 2023

  1. reverting back to earlier approach for assembling GEOSIT_defs (LDAS_F… 

    …orcing.F90)
    @gmao-rreichle
    gmao-rreichle committed Dec 6, 2023
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  2. fix GEOSIT_defs (LDAS_Forcing.F90)

    @gmao-rreichle
    gmao-rreichle committed Dec 6, 2023
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  3. fix typo

    @gmao-qliu
    gmao-qliu committed Dec 6, 2023
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  4. fix SLURM directive (ldas_setup)

    @gmao-rreichle
    gmao-rreichle committed Dec 6, 2023
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  5. add select_species_Tb

    @amfox37
    amfox37 committed Dec 6, 2023
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  6. switch to allocate(mwRTM_param(0))

    @amfox37
    amfox37 committed Dec 6, 2023
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  7. Merge branch 'bugfix/amfox/not_using_mwrtm' of https://github.com/GEO… 

    …S-ESM/GEOSldas into bugfix/amfox/not_using_mwrtm
    @amfox37
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Commits on Dec 7, 2023

  1. add GEOS-IT met forcing (#688)

    @gmao-rreichle
    gmao-rreichle committed Dec 7, 2023
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  2. Merge branch 'develop' into bugfix/amfox/not_using_mwrtm

    @gmao-rreichle
    gmao-rreichle committed Dec 7, 2023
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  3. Merge branch 'develop' into feature/amfox/metop_sm

    @gmao-rreichle
    gmao-rreichle committed Dec 7, 2023
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  4. Merge branch 'develop' into feature/rreichle/MODIS_snow_cover_fractio… 

    …n_assimilation
    @gmao-rreichle
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  5. Merge branch 'develop' into feature/wjiang/new_bcs_structure

    @gmao-rreichle
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  6. Bug fix: Remove inadvertent requirement for mwRTM parameter input fil… 

    …es (#685)
    @gmao-rreichle
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  7. Merge branch 'develop' into feature/rreichle/MODIS_snow_cover_fractio… 

    …n_assimilation
    @gmao-rreichle
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  8. Merge branch 'develop' into feature/amfox/metop_sm

    @gmao-rreichle
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  9. Merge branch 'develop' into feature/wjiang/new_bcs_structure

    @gmao-rreichle
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Commits on Dec 18, 2023

  1. minimal update to comments (clsm_ensupd_upd_routines.F90)

    @gmao-rreichle
    gmao-rreichle committed Dec 18, 2023
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  2. minimal edits of comments, a few white-space changes (clsm_ensupd_rea… 

    …d_obs.F90)
    @gmao-rreichle
    gmao-rreichle committed Dec 18, 2023
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  3. added minor comment to (ASCAT) sfmc zscore scaling subroutine (clsm_e… 

    …nsupd_read_obs.F90)
    @gmao-rreichle
    gmao-rreichle committed Dec 18, 2023
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Commits on Dec 19, 2023

  1. moved lines with user-defined inputs into corresponding block of code

    @gmao-rreichle
    gmao-rreichle committed Dec 19, 2023
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  2. cleanup of functions to get obs scaling parameters (get_model_and_obs… 

    …_clim_stats*.m):

- fixed indentation
- improved vertical alignment of equations
- minor edits of comments
- removed obsolete code
    @gmao-rreichle
    gmao-rreichle committed Dec 19, 2023
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  3. minimal white space changes (get_tile_num_for_obs.m, pentad_of_year.m)

    @gmao-rreichle
    gmao-rreichle committed Dec 19, 2023
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  4. cleanup of netcdf writer for (ASCAT) obs scaling parameters (write_ne… 

    …tcdf_latlon_grid.m):

- fixed indentation
- improved vertical alignment of equations
- fixed typo in 'long_name' of 'lat', 'lon' variables
    @gmao-rreichle
    gmao-rreichle committed Dec 19, 2023
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  5. replaced deprecated Matlab functions "nanmean", "nanstd", and "nansum… 

    …" with "mean", "std", and "sum"; avoids dependency on Stats toolbox (various *.m)
    @gmao-rreichle
    gmao-rreichle committed Dec 19, 2023
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  6. construct "ldas_obsparam" file name from user-defined inputs (Run_get… 

    …_model_and_obs_clim_stats_latlon_grid.m)
    @gmao-rreichle
    gmao-rreichle committed Dec 19, 2023
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Commits on Dec 22, 2023

  1. fix bad no-data check (get_model_and_obs_clim_stats*.m)

    @gmao-rreichle
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  2. allocate(0)

    @amfox37
    amfox37 committed Dec 22, 2023
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  3. remove lat lon vectors from matlab write 

    remove lat lon vectors from read_obs
remove insane sanity check
    @amfox37
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Commits on Dec 24, 2023

  1. Adding ASCAT SM reader and matlab util for clim_stats (#656)

    @gmao-rreichle
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Commits on Jan 12, 2024

  1. added openmpi flags to make it run faster on SLES15 ( it doesn't hurt… 

    … on SLES12)
    @weiyuan-jiang
    weiyuan-jiang committed Jan 12, 2024
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  2. submit job to where it is built

    @weiyuan-jiang
    weiyuan-jiang committed Jan 12, 2024
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  3. typo fix

    @weiyuan-jiang
    weiyuan-jiang committed Jan 12, 2024
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  4. more typo fix

    @weiyuan-jiang
    weiyuan-jiang committed Jan 12, 2024
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Commits on Jan 17, 2024

  1. add constraint based on BUILT_ON_SLES15

    @weiyuan-jiang
    weiyuan-jiang committed Jan 17, 2024
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  2. minor edits of SLES15 comments (ldas_setup)

    @gmao-rreichle
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Commits on Jan 20, 2024

  1. updated README.md for use of Milan nodes (SLES15) at NCCS

    @gmao-rreichle
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Commits on Jan 26, 2024

  1. Update CircleCI to use Orb v2 

    This PR updates the CircleCI config the v2 orb. This has updated
needed for changes in GEOSgcm_App and Baselibs
    @mathomp4
    mathomp4 committed Jan 26, 2024
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  2. Update CircleCI to use Orb v2 (#694)

    @gmao-rreichle
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  3. Merge branch 'develop' into feature/wjiang/openmpi_flag

    @biljanaorescanin
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Commits on Jan 30, 2024

  1. Merge branch 'develop' into feature/wjiang/new_bcs_structure

    @biljanaorescanin
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Commits on Jan 31, 2024

  1. Merge branch 'develop' into feature/rreichle/MODIS_snow_cover_fractio… 

    …n_assimilation
    @lcandre2
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  2. generic nco

    @biljanaorescanin
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  3. remove obsolete if

    @biljanaorescanin
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Commits on Feb 1, 2024

  1. update generate_catchincr_hist.py and LADAS example documents in LDA… 

    …S_App/
    @saraqzhang
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  2. edited documentation re. GEOSldas HISTORY output needed for Hybrid-4D… 

    …EnVar atm ensemble (generate_catchincr_hist.py)
    @gmao-rreichle
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Commits on Feb 2, 2024

  1. merge the text edit in py, re-generated HISTORY.rc.atmens

    @saraqzhang
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  2. Merge branch 'feature/saraqzhang/ladasApp4develop' of github.com:GEOS… 

    …-ESM/GEOSldas into feature/saraqzhang/ladasApp4develop

get the edited version of python code
    @saraqzhang
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  3. incorporate edits in py and re-generate HISTORY.rc

    @saraqzhang
    saraqzhang committed Feb 2, 2024
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Commits on Feb 6, 2024

  1. Update to ESMA_cmake v3.40.0

    @mathomp4
    mathomp4 committed Feb 6, 2024
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  2. Update to ESMA_cmake v3.40.0

    @gmao-rreichle
    gmao-rreichle committed Feb 6, 2024
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  3. Merge branch 'develop' into feature/amfox/smap_ascat

    @amfox37
    amfox37 committed Feb 6, 2024
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  4. LDAS_App tidy up

    @amfox37
    amfox37 committed Feb 6, 2024
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Commits on Feb 7, 2024

  1. tidy up unused variables and debugging

    @amfox37
    amfox37 committed Feb 7, 2024
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  2. more tidying

    @amfox37
    amfox37 committed Feb 7, 2024
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  3. remove white space

    @amfox37
    amfox37 committed Feb 7, 2024
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  4. Merge branch 'develop' into feature/wjiang/new_bcs_structure

    @gmao-rreichle
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  5. Merge branch 'develop' into feature/wjiang/openmpi_flag

    @gmao-rreichle
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  6. Merge branch 'develop' into feature/saraqzhang/ladasApp4develop

    @gmao-rreichle
    gmao-rreichle committed Feb 7, 2024
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  7. Merge branch 'develop' into feature/rreichle/MODIS_snow_cover_fractio… 

    …n_assimilation
    @gmao-rreichle
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Commits on Feb 8, 2024

  1. generate_catchincr_hist.py using python module version in g5_module

    @saraqzhang
    saraqzhang committed Feb 8, 2024
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  2. Make GEOSldas work for SLES15 / Milan (#693)

    @gmao-rreichle
    gmao-rreichle committed Feb 8, 2024
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  3. Update comment in generate_catchincr_hist.py

    @gmao-rreichle
    gmao-rreichle committed Feb 8, 2024
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  4. fixed bugs in previous commit (generate_catchincr_hist.py)

    @gmao-rreichle
    gmao-rreichle committed Feb 8, 2024
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  5. additional documentation of generate_catchincr_hist.py

    @gmao-rreichle
    gmao-rreichle committed Feb 8, 2024
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  6. Merge branch 'develop' into feature/saraqzhang/ladasApp4develop

    @gmao-rreichle
    gmao-rreichle committed Feb 8, 2024
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  7. Merge branch 'develop' into feature/amfox/smap_ascat

    @amfox37
    amfox37 committed Feb 8, 2024
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  8. update generate_catchincr_hist.py and LADAS sample documents (#698)

    @gmao-rreichle
    gmao-rreichle committed Feb 8, 2024
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  9. Merge branch 'develop' into feature/amfox/smap_ascat

    @gmao-rreichle
    gmao-rreichle committed Feb 8, 2024
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  10. Merge branch 'develop' into feature/wjiang/new_bcs_structure

    @gmao-rreichle
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  11. Merge branch 'develop' into feature/rreichle/MODIS_snow_cover_fractio… 

    …n_assimilation
    @gmao-rreichle
    gmao-rreichle committed Feb 8, 2024
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Commits on Feb 9, 2024

  1. minor edits for new update_type=13 (clsm_ensupd_upd_routines.F90): 

    - added 'sfmc' obs
- added/edited comments
- fixed indent
- minor simplifications
    @gmao-rreichle
    gmao-rreichle committed Feb 9, 2024
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Commits on Feb 13, 2024

  1. add NAS site

    @weiyuan-jiang
    weiyuan-jiang committed Feb 13, 2024
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  2. Merge branch 'develop' into feature/wjiang/NAS_support

    @weiyuan-jiang
    weiyuan-jiang committed Feb 13, 2024
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  3. disable Catchment-CN4.5 option for GEOSldas

    @gmao-jkolassa
    gmao-jkolassa committed Feb 13, 2024
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  4. use GEOSgcm_GridComp branch implementing CN45 disabling

    @gmao-jkolassa
    gmao-jkolassa committed Feb 13, 2024
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Commits on Feb 15, 2024

  1. Disable CatchmentCNCLM45 model (LSM_CHOICE=3) (#707) 

    CatchCN-4.5 is no longer supported.
    @gmao-rreichle
    gmao-rreichle committed Feb 15, 2024
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  2. Fix error in components.yaml of #707

    @gmao-rreichle
    gmao-rreichle committed Feb 15, 2024
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  3. Fix error in components.yaml of #707 

    Fix error in components.yaml of #707
    @biljanaorescanin
    biljanaorescanin committed Feb 15, 2024
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  4. sparse checkout of GEOS_util

    @weiyuan-jiang
    weiyuan-jiang committed Feb 15, 2024
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Commits on Feb 16, 2024

  1. renamed GEOSldas_GridComp/Shared to GEOSldas_GridComp/LDAS_Shared

    @gmao-rreichle
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  2. rename GEOSldas_GridComp/Shared to GEOSldas_GridComp/LDAS_Shared (#714) 

    avoids potential naming conflicts/confusion in preparation for integrating GEOSldas into GEOSadas as external repo(s)
    @gmao-rreichle
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  3. Merge branch 'develop' into feature/rreichle/MODIS_snow_cover_fractio… 

    …n_assimilation
    @gmao-rreichle
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  4. Merge branch 'develop' into feature/wjiang/new_bcs_structure

    @gmao-rreichle
    gmao-rreichle committed Feb 16, 2024
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  5. Merge branch 'develop' into feature/amfox/smap_ascat

    @gmao-rreichle
    gmao-rreichle committed Feb 16, 2024
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  6. Merge branch 'develop' into feature/wjiang/NAS_support

    @gmao-rreichle
    gmao-rreichle committed Feb 16, 2024
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  7. Merge branch 'develop' into feature/wjiang/sparse_util

    @gmao-rreichle
    gmao-rreichle committed Feb 16, 2024
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Commits on Feb 19, 2024

  1. add trim when selecting by varname

    @amfox37
    amfox37 committed Feb 19, 2024
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  2. Merge branch 'feature/amfox/smap_ascat' of github.com:GEOS-ESM/GEOSld… 

    …as into feature/amfox/smap_ascat
    @amfox37
    amfox37 committed Feb 19, 2024
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  3. Clarify comments in clsm_ensupd_enkf_update.F90

    @amfox37
    amfox37 committed Feb 19, 2024
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Commits on Feb 20, 2024

  1. Fix issue with select_varnames

    @amfox37
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Commits on Feb 21, 2024

  1. read precipcor daily nc files

    @gmao-qliu
    gmao-qliu committed Feb 21, 2024
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  2. fix bug "+" string

    @weiyuan-jiang
    weiyuan-jiang committed Feb 21, 2024
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  3. updated components.yaml with GEOS_Util v2.0.6 release that supports s… 

    …parse checkout and new bcs layout
    @gmao-rreichle
    gmao-rreichle committed Feb 21, 2024
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  4. adapt to new bcs structure (#680)

    @gmao-rreichle
    gmao-rreichle committed Feb 21, 2024
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  5. Merge branch 'develop' into feature/wjiang/sparse_util

    @gmao-rreichle
    gmao-rreichle committed Feb 21, 2024
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  6. sparse checkout of GEOS_Util (#711)

    @gmao-rreichle
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Commits on Feb 22, 2024

  1. Merge branch 'develop' into feature/wjiang/NAS_support

    @weiyuan-jiang
    weiyuan-jiang committed Feb 22, 2024
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  2. get npes form PBS or SLURM

    Weiyuan Jiang committed Feb 22, 2024
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Commits on Feb 23, 2024

  1. update filename parse

    @gmao-qliu
    gmao-qliu committed Feb 23, 2024
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  2. Merge branch 'develop' into feature/rreichle/MODIS_snow_cover_fractio… 

    …n_assimilation
    @lcandre2
    lcandre2 committed Feb 23, 2024
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  3. Add Aqua to DEFAULT.nml and change N_obs_species

    Lauren C. Andrews committed Feb 23, 2024
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Commits on Feb 24, 2024

  1. Support for running GEOSldas at NAS (#706)

    @gmao-rreichle
    gmao-rreichle committed Feb 24, 2024
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  2. Merge branch 'develop' into feature/qliu/read_precipcor_dailyfiles

    @gmao-rreichle
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  3. minimal cleanup (white space, alignment, unnecessary declaration) fro… 

    …m previous commits (LDAS_Forcing.F90)
    @gmao-rreichle
    gmao-rreichle committed Feb 24, 2024
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  4. Fixed error log associated with previous changes in get_GEOS_corr_pre… 

    …c_filename() (LDAS_Forcing.F90)
    @gmao-rreichle
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Commits on Feb 26, 2024

  1. support reading corrected precipitation from aggregated daily netcdf … 

    …files (#718)

support reading corrected precipitation from aggregated daily netcdf files
    @gmao-rreichle
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  2. remove catdef from state for non-peatland tiles

    @amfox37
    amfox37 committed Feb 26, 2024
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  3. add ascat mask to read_obs

    @amfox37
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Commits on Feb 27, 2024

  1. disabled updated_type=[1,2]; cleanup of new update_type=13 (clsm_ensu… 

    …pd_upd_routines.F90, clsm_ensupd_enkf_update.F90, LDASsa_DEFAULT_inputs_ensupd.nml)
    @gmao-rreichle
    gmao-rreichle committed Feb 27, 2024
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  2. Merge branch 'develop' into feature/amfox/smap_ascat

    @gmao-rreichle
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  3. Merge branch 'feature/amfox/smap_ascat' into feature/amfox/ascat_mask

    @amfox37
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  4. Add "update_type" for joint assimilation of ASCAT SM and SMAP Tb (#703)

    @gmao-rreichle
    gmao-rreichle committed Feb 27, 2024
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Commits on Feb 28, 2024

  1. replace loops with minloc

    @amfox37
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  2. Merge branch 'feature/amfox/ascat_mask' of github.com:GEOS-ESM/GEOSld… 

    …as into feature/amfox/ascat_mask
    @amfox37
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  3. move to fixed lat/lon ascat mask

    @amfox37
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  4. Merge branch 'develop' into feature/rreichle/MODIS_snow_cover_fractio… 

    …n_assimilation
    @gmao-rreichle
    gmao-rreichle committed Feb 28, 2024
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  5. moved MODIS SCF species into adjacent blocks in LDASsa_DEFAULT_inputs… 

    …_ensupd.nml
    @gmao-rreichle
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  6. ascat mask tidy up

    @amfox37
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  7. Merge branch 'develop' into feature/amfox/ascat_mask

    @amfox37
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  8. remove mask_name declaration

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  9. renamed variables for ASCAT mask for clarity (clsm_ensupd_read_obs.F90)

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Commits on Feb 29, 2024

  1. added %maskpath and %maskname fields to obs_param (enkf_types.F90, LD… 

    …AS_ensdrv_mpi.F90, LDASsa_DEFAULT_inputs_ensupd.nml, read_obsparam.m, clsm_ensupd_read_obs.F90)
    @gmao-rreichle
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  2. fix typo in previous commit (clsm_ensupd_read_obs.F90)

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    gmao-rreichle committed Feb 29, 2024
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  3. switch to lon-by-lat

    @amfox37
    amfox37 committed Feb 29, 2024
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  4. Read and apply mask during ASCAT QC (#723)

    @gmao-rreichle
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  5. Merge branch 'develop' into feature/rreichle/MODIS_snow_cover_fractio… 

    …n_assimilation
    @gmao-rreichle
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  6. Update utilities versions (components.yaml): 

    ESMA_env v4.26.0
ESMA_cmake v3.41.0
GMAO_Shared v1.9.7
GEOS_Util v2.0.7
MAPL v2.44.0
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Commits on Mar 1, 2024

  1. reverting back to ESMA_env v4.23.0

    @gmao-rreichle
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  2. MODIS snow cover fraction assimilation

    @biljanaorescanin
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  3. Merge branch 'develop' into feature/rreichle/update_utilities_29Feb2024

    @gmao-rreichle
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  4. Update utilities versions (#725) 

    Update utilities versions (components.yaml)
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Commits on Mar 11, 2024

  1. add ascat mask maker

    @amfox37
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Commits on Mar 12, 2024

  1. discover filepath

    @amfox37
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  2. added header comment

    @amfox37
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  3. change default file write to current directory

    @amfox37
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  4. updated documentation in prep for release v18.0.0-beta (CHANGELOG.md,… 

    … README.MetForcing_and_BCS.md)
    @gmao-rreichle
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  5. added MET_PATH and MET_TAG for GEOS-IT forcing (README.MetForcing_and… 

    …_BCS.md)
    @gmao-rreichle
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  6. minor cleanup and documentation (ascat_mask_maker.F90, CMakeLists.txt)

    @gmao-rreichle
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  7. updated EASEv2_M09 grid name (README.MetForcing_and_BCS.md)

    @gmao-rreichle
    gmao-rreichle committed Mar 12, 2024
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Commits on Mar 13, 2024

  1. declare mask variables as integers

    @amfox37
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  2. additional corrections and updates (README.MetForcing_and_BCS.md)

    @gmao-rreichle
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  3. white-space changes to fix alignment (README.MetForcing_and_BCS.md)

    @gmao-rreichle
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  4. additional minor edits (README.MetForcing_and_BCS.md)

    @gmao-rreichle
    gmao-rreichle committed Mar 13, 2024
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  5. minor edits re. release v18.0.0-beta (CHANGELOG.md)

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    gmao-rreichle committed Mar 13, 2024
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  6. Point to GEOSgcm_GridComp branch with non-0-diff snow model fixes (co… 

    …mponents.yaml)
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  7. Point to GEOSgcm_GridComp branch with non-0-diff snow model fixes (#730)

    @gmao-rreichle
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Commits on Mar 14, 2024

  1. reverting to "develop" branch for GEOSgcm_GridComp (components.yaml)

    @gmao-rreichle
    gmao-rreichle committed Mar 14, 2024
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Commits on Mar 17, 2024

  1. move lat/lon to grid cell center

    @amfox37
    amfox37 committed Mar 17, 2024
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Commits on Mar 18, 2024

  1. Use tempfile for domain def

    @mathomp4
    mathomp4 committed Mar 18, 2024
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  2. Close the file

    @mathomp4
    mathomp4 committed Mar 18, 2024
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  3. Use os.remove

    @mathomp4
    mathomp4 committed Mar 18, 2024
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  4. Fix binary + bit shaving bug

    @mathomp4
    mathomp4 committed Mar 18, 2024
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  5. add combination choices

    @amfox37
    amfox37 committed Mar 18, 2024
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Commits on Mar 19, 2024

  1. additional cleanup and documentation of ascat_mask_maker.F90: 

    - clarified comments and error messages
- change "== 1" to "/= 0" for consistency with ASCAT EUMETSAT reader
- avoid repeated allocate/deallocate within i,j loop
- use nint() to avoid risky integer division when calculating N_lon, N_lat
    @gmao-rreichle
    gmao-rreichle committed Mar 19, 2024
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  2. Merge branch 'develop' into feature/amfox/ascat_mask_maker

    @gmao-rreichle
    gmao-rreichle committed Mar 19, 2024
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  3. CMakeLists to build without install

    @amfox37
    amfox37 committed Mar 19, 2024
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  4. updated paths to ASCAT EUMETSAT soil moisture retrieval data and mask… 

    … file (LDASsa_DEFAULT_inputs_ensupd.nml, ascat_mask_maker.F90)
    @gmao-rreichle
    gmao-rreichle committed Mar 19, 2024
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  5. Add preprocessing utility program to create mask file for ASCAT soil … 

    …moisture retrievals (#729)
    @gmao-rreichle
    gmao-rreichle committed Mar 19, 2024
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  6. Merge branch 'develop' into feature/rreichle/GEOSgcm_GridComp_develop

    @gmao-rreichle
    gmao-rreichle committed Mar 19, 2024
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  7. Merge branch 'develop' into feature/rreichle/update_doc_Mar2024

    @gmao-rreichle
    gmao-rreichle committed Mar 19, 2024
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  8. Merge branch 'develop' into feature/mathomp4/699-use-tempfile

    @gmao-rreichle
    gmao-rreichle committed Mar 19, 2024
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  9. Merge branch 'develop' into bugfix/mathomp4/ben-mapl-fix

    @gmao-rreichle
    gmao-rreichle committed Mar 19, 2024
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  10. reverting to "develop" branch for GEOSgcm_GridComp (components.yaml) (#… 

    …732)
    @gmao-rreichle
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  11. use develop for GEOSgcm_GridComp

    @biljanaorescanin
    biljanaorescanin committed Mar 19, 2024
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  12. Merge branch 'develop' into bugfix/mathomp4/ben-mapl-fix

    @biljanaorescanin
    biljanaorescanin committed Mar 19, 2024
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  13. Merge branch 'develop' into feature/rreichle/update_doc_Mar2024

    @gmao-rreichle
    gmao-rreichle committed Mar 19, 2024
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  14. Merge branch 'develop' into feature/mathomp4/699-use-tempfile

    @gmao-rreichle
    gmao-rreichle committed Mar 19, 2024
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Commits on Mar 20, 2024

  1. Update to MAPL 2.44.1

    @mathomp4
    mathomp4 committed Mar 20, 2024
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  2. Update to MAPL v2.44.1 to fix "binary + bit shaving" bug (#734)

    @gmao-rreichle
    gmao-rreichle committed Mar 20, 2024
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  3. updated documentation of Release v18.0.0 (CHANGELOG.md)

    @gmao-rreichle
    gmao-rreichle committed Mar 20, 2024
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  4. add more tmp file

    @weiyuan-jiang
    weiyuan-jiang committed Mar 20, 2024
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  5. more files in tempfile

    @weiyuan-jiang
    weiyuan-jiang committed Mar 20, 2024
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  6. Merge branch 'develop' into feature/mathomp4/699-use-tempfile

    @gmao-rreichle
    gmao-rreichle committed Mar 20, 2024
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Commits on Mar 21, 2024

  1. Allow users to setup a GEOSldas experiment from somebody else's build (… 

    …#733)

- use py "tempfile" to avoid permissions conflict when creating temporary files
    @gmao-rreichle
    gmao-rreichle committed Mar 21, 2024
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  2. Merge branch 'develop' into feature/rreichle/update_doc_Mar2024

    @gmao-rreichle
    gmao-rreichle committed Mar 21, 2024
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  3. additional updates for Release v18.0.0 (CHANGELOG.md)

    @gmao-rreichle
    gmao-rreichle committed Mar 21, 2024
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  4. Update some GitHub Actions versions

    @mathomp4
    mathomp4 committed Mar 21, 2024
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  5. create IMS.rc or JMS.rc directly on run_dir

    @weiyuan-jiang
    weiyuan-jiang committed Mar 21, 2024
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  6. Merge branch 'develop' into feature/mathomp4/699-use-tempfile

    @gmao-rreichle
    gmao-rreichle committed Mar 21, 2024
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  7. Merge pull request #739 from GEOS-ESM/feature/mathomp4/ci-update 

    Update some GitHub Actions versions
    @mathomp4
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  8. Merge branch 'develop' into feature/mathomp4/699-use-tempfile

    @gmao-rreichle
    gmao-rreichle committed Mar 21, 2024
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  9. more documentation updates in prep for v18.0.0 (CHANGELOG.md, README.… 

    …MetForcing_and_BCS.md)
    @gmao-rreichle
    gmao-rreichle committed Mar 21, 2024
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  10. Merge branch 'develop' into feature/rreichle/update_doc_Mar2024

    @gmao-rreichle
    gmao-rreichle committed Mar 21, 2024
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  11. create IMS.rc or JMS.rc directly on run_dir (#740) 

    The present PR is a continuation of #733.
    @gmao-rreichle
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  12. Merge branch 'develop' into feature/rreichle/update_doc_Mar2024

    @gmao-rreichle
    gmao-rreichle committed Mar 21, 2024
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  13. mininmal updates of Release v18.0.0 documentation (CHANGELOG.md)

    @gmao-rreichle
    gmao-rreichle committed Mar 21, 2024
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Commits on Mar 22, 2024

  1. updated documentation in prep for Release v18.0.0 (#728)

    @gmao-rreichle
    gmao-rreichle committed Mar 22, 2024
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  2. updating components.yaml file in prep for merge into main (components… 

    ….yaml)
    @gmao-rreichle
    gmao-rreichle committed Mar 22, 2024
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  3. Merge branch 'main' into BRIDGE (manually resolved conflicts in compo… 

    …nents.yaml and doc/CHANGELOG.md)
    @gmao-rreichle
    gmao-rreichle committed Mar 22, 2024
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