phenopipe postprocess home

Phenopipe Postprocessing Server

Setup

R Scripting

On this server the postprocessing of the IAP analysis results will be performed. You have the possibility to upload your own R scripts to this server which you can select to be applied on the results via the web interface. This enables you to run your scripts in an automated way on a powerful server with more resources than your local machine.

System Requirements

• *nix operating system
  • Tested on Scientific Linux 6
• Java Runtime Environment
• MongoDB 3.4

A R installation is not required because we internally use Renjin to execute the R scripts. This results in faster code execution than standard R and additionally we can easily communication between the Java server code and the actual R scripts and can execute multiple scripts in parallel.