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rdmorin edited this page Jul 3, 2024 · 18 revisions

bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

ATP2C2

Overview

Due to minimal support in the original primary data and very few mutations reported in subsequent studies, this gene is very unlikely to be relevant in BL.

<<Warn("The variants reported in this gene in BL failed QC")>>

History

%%{init: { 'logLevel': 'debug', 'theme': 'dark' } }%%
timeline
    title Publication timing
      2012-12-01 : Love : BL
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Relevance tier by entity

Entity Tier Description
BL 3 Retired, Failed QC[@loveGeneticLandscapeMutations2012]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
BL GAMBL genomes+capture 3.7
BL Thomas cohort NA
BL Panea cohort NA

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL No No 0.473 0
DLBCL No No 0.000 0
FL No No 3.759 0

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

ATP2C2 Expression

Representative Mutation

Rating ★ ★ ☆ ☆ ☆

All Mutations

1102 667 677

References

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