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rdmorin edited this page Jun 25, 2024 · 17 revisions

bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

LYN

Overview

LYN mutations have been reported in DLBCL but the rate is relatively rare in most cohorts. The mutation pattern in DLBCL and FL implies the preferential accumulation of inactivating mutations. Without further support, this gene may be migrated to Tier 2.

History

%%{init: { 'logLevel': 'debug', 'theme': 'dark' } }%%
timeline
    title Publication timing
      2018-05-01 : Chapuy : DLBCL
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Relevance tier by entity

Entity Tier Description
DLBCL 2 low-confidence DLBCL gene[@chapuyMolecularSubtypesDiffuse2018b]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
DLBCL GAMBL genomes 2.29
DLBCL Schmitz cohort 1.70
DLBCL Reddy cohort 1.30
DLBCL Chapuy cohort 5.56

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL No No 1.641 0.000
DLBCL No No 10.031 17.456
FL No No 0.000 0.000

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

LYN Expression

All Mutations

DLBCL-RICOVER_1081-Tumor DLBCL-RICOVER_181-Tumor DLBCL-RICOVER_773-Tumor

References

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