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rdmorin edited this page Jun 21, 2024 · 13 revisions

bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

TRAF6

History

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timeline
    title Publication timing
      2021-05-05 : Hübschmann : DLBCL
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Relevance tier by entity

Entity Tier Description
DLBCL 2 relevance in DLBCL not firmly established[@hubschmannMutationalMechanismsShaping2021b]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
DLBCL GAMBL genomes 1.34
DLBCL Schmitz cohort 1.49
DLBCL Reddy cohort 0.90
DLBCL Chapuy cohort 1.28

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL No No 0.000 0.000
DLBCL No No 1.970 61.299
FL No No 9.831 0.000

TRAF6 Hotspots

Chromosome Coordinate (hg19) ref>alt HGVSp
chr11 36511924 C>A E345*
chr11 36511915 G>A Q348*
chr11 36511893 C>T W355*
chr11 36511892 C>T W355*

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

TRAF6 Expression

All Mutations

SP116630 SP193005 SP193312 SP59456

References

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