v0.3.4

• Fixed bug in ard_stats_mantelhaen_test() where arguments were passed to stats::mantelhaen.test() positionally rather than by name, causing a test failure and incorrect results under R-devel. (#343)

What's Changed

• Fix ard_stats_mantelhaen_test() failure on R-devel by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/343
• Reduce mantelhaen.test() choice-argument defaults to scalars for R-devel by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/349

Full Changelog: insightsengineering/cardx@v0.3.3...v0.3.4

v0.3.3

• Fixed bug in extract_strata() where parentheses in strata level labels were incorrectly stripped, e.g. "Drug (B)" was truncated to "B". (#2388)
• Added fix to ensure as_card does not error after update to cards
• Bug fix in ard_car_vif() where non-syntactic variable names (e.g. those containing spaces) were returned with backticks in the variable column. Since gtsummary::tbl_regression() stores variable names without backticks, this mismatch resulted in empty VIF columns in gtsummary::add_vif(). (#335, @NourEdinDarwish)

What's Changed

• Add as_card(check=FALSE) by @kieranjmartin in https://github.com/insightsengineering/cardx/pull/329
• fix: strip backticks from variable names in ard_car_vif() by @NourEdinDarwish in https://github.com/insightsengineering/cardx/pull/336
• Fix extract_strata() stripping parentheses from strata level labels by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/338
• Preparations for the release by @llrs-roche in https://github.com/insightsengineering/cardx/pull/340

New Contributors

• @kieranjmartin made their first contribution in https://github.com/insightsengineering/cardx/pull/329
• @NourEdinDarwish made their first contribution in https://github.com/insightsengineering/cardx/pull/336

Full Changelog: insightsengineering/cardx@v0.3.2...v0.3.3

v0.3.2

• Swapped internal use of dplyr::case_when() for dplyr::recode_values() as the former is now deprecated. (#327)

Full Changelog: insightsengineering/cardx@v0.3.1...v0.3.2

v0.3.1

• Added the ard_emmeans_emmeans() function. (#317)
• Renamed ard_emmeans_mean_difference() to ard_emmeans_contrast() to align with function naming conventions.
• The ard_complex() function has been renamed to ard_mvsummary().

What's Changed

• draft for mean.estimates included in mean.difference.estimates (ANCOVA in tern) by @ayogasekaram in https://github.com/insightsengineering/cardx/pull/265
• Split ard_emmeans_mean_difference() function into ard_emmeans_contrast() and ard_emmeans_emmeans() by @edelarua in https://github.com/insightsengineering/cardx/pull/318
• Use skip_if_pkg_not_installed() by @edelarua in https://github.com/insightsengineering/cardx/pull/321
• Add insightsengineering/crane to .revdeprefs.yaml by @shajoezhu in https://github.com/insightsengineering/cardx/pull/323
• Add coda package dependency by @shajoezhu in https://github.com/insightsengineering/cardx/pull/324
• Update DESCRIPTION: deps update by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/325

Full Changelog: insightsengineering/cardx@v0.3.0...v0.3.1

v0.3.0

New Features and Updates

• Added function ard_tabulate_abnormal() to calculate ARDs for abnormality analyses. (#310)
• Adding strata argument to ard_tabulate_max(). (#445, @jtalboys)
• Added function ard_incidence_rate() to calculate ARDs for incidence rate estimation. (#234)

Lifecycle Changes

• The following functions have been renamed.

  • ard_continuous() to ard_summary()
  • ard_categorical() to ard_tabulate()
  • ard_dichotomous() to ard_tabulate_value()
  • ard_categorical_max() to ard_tabulate_max()

• Updating any fmt_fn references to fmt_fun for consistency.

  • Any function with an argument cardx::foo(fmt_fn) has been updated to cardx::foo(fmt_fun). The old syntax will continue to function, but with a deprecation warning to users.
  • Importantly, the ARD column named "fmt_fn" has been updated to "fmt_fun". This change cannot be formally deprecated. For users who were accessing the ARD object directly to modify this column instead of using functions like cards::update_ard_fmt_fun(), this will be a breaking change.

Bug Fixes

• Fix in ard_survival_survfit.data.frame() method where the stratifying variable was not correctly converted back to its original type.
• Fix in ard_total_n.survey.design() to use update() instead of dplyr::mutate(), which sometimes caused a downstream issue.

What's Changed

• Add ard_abnormal() for abnormality calculations by @edelarua in https://github.com/insightsengineering/cardx/pull/311
• Surface deff argument and set default to FALSE by @malcolmbarrett in https://github.com/insightsengineering/cardx/pull/313
• Core function renames by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/315

New Contributors

• @malcolmbarrett made their first contribution in https://github.com/insightsengineering/cardx/pull/313

Full Changelog: insightsengineering/cardx@v0.2.5...v0.3.0

v0.2.5

• Adding strata argument to ard_categorical_max(). (#445, @jtalboys)

• Added function ard_incidence_rate() to calculate ARDs for incidence rate estimation. (#234)

• Updating any fmt_fn references to fmt_fun for consistency.

  • Any function with an argument cardx::foo(fmt_fn) has been updated to cardx::foo(fmt_fun). The old syntax will continue to function, but with a deprecation warning to users.
  • Importantly, the ARD column named "fmt_fn" has been updated to "fmt_fun". This change cannot be formally deprecated. For users who were accessing the ARD object directly to modify this column instead of using functions like cards::update_ard_fmt_fun(), this will be a breaking change.

• Fix in ard_survival_survfit.data.frame() method where the stratifying variable was not correctly converted back to its original type.

• Fix in ard_total_n.survey.design() to use update() instead of dplyr::mutate(), which sometimes caused a downstream issue.

What's Changed

• Add ard_incidence_rate() by @edelarua in https://github.com/insightsengineering/cardx/pull/280
• update forcats standalone script by @ayogasekaram in https://github.com/insightsengineering/cardx/pull/297
• Fix in ard_survival_survfit.data.frame() type conversion by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/298
• Add strata argument to ard_categorical_max by @jtalboys in https://github.com/insightsengineering/cardx/pull/300
• Fmt fn to fmt fun by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/302
• 267 add unit test@main by @ayogasekaram in https://github.com/insightsengineering/cardx/pull/293

New Contributors

• @jtalboys made their first contribution in https://github.com/insightsengineering/cardx/pull/300

Full Changelog: insightsengineering/cardx@v0.2.4...v0.2.5

v0.2.4

New Features and Updates

• Added function ard_stats_mantelhaen_test() to calculate ARDs for Cochran-Mantel-Haenszel test results using stats::mantelhaen.test(). (#238)
• Added a ard_regression.data.frame() S3 method. Also converted ard_regression_basic() to an S3 generic and added a ard_regression_basic.data.frame() method (#287)
• Specifying ard_survfit_survfit.data.frame(variables=NULL) now creates an unstratified survfit() model, where previously variables argument could not be empty. (#277)
• The ard_survfit_survfit.data.frame(variables) now accepts tidyselect input. (#278)
• Added conf.level and conf.type to ard_survival_survfit() results. (#218)
• Added cards::as_cards_fun() to ard_emmeans_mean_difference() so when an error occurs the user gets an ARD with the expected ARD structure. (#132)

What's Changed

• Add parameter checks to ard_survival_survfit() by @edelarua in https://github.com/insightsengineering/cardx/pull/276
• pull changes from standalone script by @ayogasekaram in https://github.com/insightsengineering/cardx/pull/273
• ard_survfit_survfit.data.frame() can now construct unstratified model by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/279
• Adding ard_regression.data.frame() method by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/288
• Add conf.level to ard_survival_survfit() results by @edelarua in https://github.com/insightsengineering/cardx/pull/282
• Capture errors from ard_emmeans_mean_difference() using as_cards_fn() by @edelarua in https://github.com/insightsengineering/cardx/pull/283
• Add ard_stats_mantelhaen_test() by @edelarua in https://github.com/insightsengineering/cardx/pull/246
• Returning ard_survival_survfit() conf.level as numeric (was previously character) by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/291

Full Changelog: insightsengineering/cardx@v0.2.3...v0.2.4

v0.2.3

New Features and Updates

• Added function ard_categorical_max() to calculate categorical occurrence rates by maximum level per unique ID. (#240)

Other Updates

• Little n is now returned with the results of the proportion_ci_*() functions, which then flows into the results of ard_proportion_ci(). (#256)
• Added as_cards_fun() to ard_categorical_ci() so when there is an error, the user gets an ARD with the expected ARD structure. (#262)
• Update in ard_categorical.survey.design() for factor variables that are all missing. These variables can now be tabulated, where previously this resulted in an error.
• Update in ard_missing.survey.design() where we can now tabulate the missing rate of design variables, such as the weights.

Bug Fixes

• Fixed a bug in ard_survival_survfit() causing an error when "=" character is present in stratification variable level labels. (#252)
• Bug fix in ard_categorical_ci(denominator='cell') when missing values were present in the by variable.

What's Changed

• update for fct variables that are all NA by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/248
• Replace logo.png by logo.svg by @llrs-roche in https://github.com/insightsengineering/cardx/pull/249
• Fix in ard_missing() for design variables by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/250
• Adding ard_categorical_ci(denominator) argument by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/251
• Revert to png logo by @llrs-roche in https://github.com/insightsengineering/cardx/pull/254
• cleaning up by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/255
• Fix bug in ard_survival_survfit() when "=" is in strata variable labels by @edelarua in https://github.com/insightsengineering/cardx/pull/253
• Add ard_categorical_max() by @edelarua in https://github.com/insightsengineering/cardx/pull/244
• Fix failing integration test by @edelarua in https://github.com/insightsengineering/cardx/pull/258
• Removed spelling from DESCRIPTION, similar to what was done in cards by @kimjj93 in https://github.com/insightsengineering/cardx/pull/259
• Adding n to the proportion_ci*() results by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/260
• Adding as_cards_fun() to ard_categorical_ci() by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/263
• better handling of NA values in ard_categorical_ci() by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/266
• Increase cards min version req by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/268
• release prep by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/271
• Remove lookup-refs by @m7pr in https://github.com/insightsengineering/cardx/pull/264

New Contributors

• @llrs-roche made their first contribution in https://github.com/insightsengineering/cardx/pull/249
• @kimjj93 made their first contribution in https://github.com/insightsengineering/cardx/pull/259
• @m7pr made their first contribution in https://github.com/insightsengineering/cardx/pull/264

Full Changelog: insightsengineering/cardx@v0.2.2...v0.2.3

v0.2.2

• Added a data.frame method to ard_survival_survfit().
• Added a warning for incorrect formula type to ard_survival_survfit(). (#223)
• Implemented summary(extend=TRUE) in ard_survival_survfit() to return results for time points out of bounds. (#224)
• Methods in the {survey} and {survival} packages do not retain inputs variables types in their outputs. We now are able retain these variable types in ARDs returned by ard_continuous.survey.design(), ard_categorical.survey.design(), ard_continuous_ci.survey.design(), ard_categorical_ci.survey.design(), and ard_survival_survfit.data.frame() (and notably, not in ard_survival_survfit.survfit()).

What's Changed

• Update DESCRIPTION by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/209
• Workflow propagations by @walkowif in https://github.com/insightsengineering/cardx/pull/206
• align lme4 version with current rspm version by @shajoezhu in https://github.com/insightsengineering/cardx/pull/211
• adding example specifying conf level in ard_survival_survfit() by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/217
• update tests by @ayogasekaram in https://github.com/insightsengineering/cardx/pull/220
• 213 update standalone@main by @ayogasekaram in https://github.com/insightsengineering/cardx/pull/225
• Enhance formula processing in ard_survival_survfit() by @edelarua in https://github.com/insightsengineering/cardx/pull/226
• Update check.yaml by @shajoezhu in https://github.com/insightsengineering/cardx/pull/230
• add ard_categorical_ci.data.frame tests. by @ayogasekaram in https://github.com/insightsengineering/cardx/pull/228
• Update scheduled.yaml by @pawelru in https://github.com/insightsengineering/cardx/pull/232
• Added function to restore types in ARDs by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/231

New Contributors

• @shajoezhu made their first contribution in https://github.com/insightsengineering/cardx/pull/211
• @pawelru made their first contribution in https://github.com/insightsengineering/cardx/pull/232

Full Changelog: insightsengineering/cardx@v0.2.1...v0.2.2

v0.2.1

New Features and Updates

• Added S3 method ard_total_n.survey.design() which returns an ARD with both the survey-weighted and unweighted total sample size.
• Added warning and error columns to ard_regression() output. (#148)
• Implemented cards::as_card() where needed in the package to convert data frames to class 'card'. (#200)

Bug Fixes

• Bug fix in ard_categorical.survey.design() where all unweighted statistics were returned, even in the case where they were explicitly not requested.

Lifecycle Changes

• The bt(pattern), reformulate2(pattern_term), reformulate2(pattern_response) arguments have been deprecated and are now ignored. We now use make.names() to determine whether a column name needs to be wrapped in backticks. (#192)

What's Changed

• Workflow propagations by @walkowif in https://github.com/insightsengineering/cardx/pull/191
• Add website URL to DESCRIPTION by @edelarua in https://github.com/insightsengineering/cardx/pull/190
• Update pkgdown site logo by @edelarua in https://github.com/insightsengineering/cardx/pull/196
• Adding ard_total_n.survey.design() S3 method by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/199
• Add warning and error columns to ard_regression() output by @edelarua in https://github.com/insightsengineering/cardx/pull/195
• Implement cards::as_card() by @edelarua in https://github.com/insightsengineering/cardx/pull/201
• add check_ard_structure() unit tests by @ayogasekaram in https://github.com/insightsengineering/cardx/pull/197
• Add ard_*() function for stats::poisson.test() by @edelarua in https://github.com/insightsengineering/cardx/pull/194
• bt(pattern) update by @ddsjoberg in https://github.com/insightsengineering/cardx/pull/207

Full Changelog: insightsengineering/cardx@v0.2.0...v0.2.1