Convert bam to two wig files with strand-specific coverage
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Updated
Mar 27, 2018 - C
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Convert bam to two wig files with strand-specific coverage
Term project for EN.600.649: Computational Genomics: Applied Comparative Genomics, Spring 2017
bamstats: BAM alignment statistics per reference sequence
It splits a fastq file containing R1 and R2 reads.
Neighbour Joining algorithm for the creation of Phylogenetic Trees, implemented in C. Project for the Bioinformatics course @unimib17/18.
An ultra compressor for alignment files
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Identification and classification of homopolymeric tracts from reads.
Software for monitoring metagenomes using nanopore sequencing reads
Project for the course of Elementi di Bioinformatica AY 2017/2018
Fast implementation of Ukkenon's O(ND) algorithm for computing edit distance
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Extracts the fasta sequence from protein stored in a PDB file
Use simple expressions to filter a BAM/CRAM file
Variant calling format (vcf) file genomics pipeline for HPC and cloud