Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
-
Updated
Jun 20, 2024 - C
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Toolkit for processing sequences in FASTA/Q formats
MMseqs2: ultra fast and sensitive search and clustering suite
Remote protein homology detection suite.
Foldseek enables fast and sensitive comparisons of large structure sets.
UCSC Genome Browser source tree. Stable branch: "beta".
Next generation sequencing reads de novo assembler.
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
GenomeTools genome analysis system.
Fast multi-line FASTA/Q reader in several programming languages
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
🔬 BEDOPS: high-performance genomic feature operations
Finds SNP sites from a multi-FASTA alignment file
A (mostly) universal methylation extractor for BS-seq experiments.